Browse Element(s) Details


Os.54898.1.S1_at

Description gb:AK107039.1
DB_XREF= gi:32992248
TID=Os.54898.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-B12, full insert sequence.
FL= gb:AK107039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4802011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47980Os.50357.1.S1_at10/113+27225595..27231444expressed protein
LOC_Os03g47990Os.54202.1.S1_at11/113+27232247..27235321OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os03g48000Os.27805.1.S1_at10/113+27237026..27243529magnesium transporter CorA-like family protein, putative, expressed
LOC_Os03g48010OsAffx.13399.1.S1_at11/113+27246577..27249455expressed protein
LOC_Os03g48030Os.14520.1.S1_at11/113+27249900..27252172HPP family protein, expressed
LOC_Os03g48020Os.54898.1.S1_at11/113+27251268..27253126expressed protein
LOC_Os03g48040Os.50976.1.S1_at10/113+27259030..27262075ferredoxin family protein, expressed
LOC_Os03g48050Os.22656.1.A1_at11/113+27263450..27265346RNA methyltransferase, TrmH family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54898.1.S1_at--345--10491Chr03:27252563..27252587 (25 bp)
TTACACGGGCGGCATGAATCCAAGC
LOC_Os03g48020
Os.54898.1.S1_at--532--10871Chr03:27252622..27252646 (25 bp)
TTGGCCGCAATGCTGGCAAGTGCTA
LOC_Os03g48020
Os.54898.1.S1_at--341--7811Chr03:27252652..27252676 (25 bp)
GGTCTATTTACCACAGGTTCTGACA
LOC_Os03g48020
Os.54898.1.S1_at--740--8951Chr03:27252672..27252696 (25 bp)
TGACAACATCCCCAACCGGTAAGAA
LOC_Os03g48020
Os.54898.1.S1_at--671--5251Chr03:27252703..27252727 (25 bp)
GAATCTGAGCATTTTATAGCCTTAT
LOC_Os03g48020
Os.54898.1.S1_at--328--10231Chr03:27252758..27252782 (25 bp)
TATTGATTGTTCTTGTCTCCTCACA
LOC_Os03g48020
Os.54898.1.S1_at--312--6891Chr03:27252795..27252819 (25 bp)
GTATATTCCTTGTACTGCACGAGTA
LOC_Os03g48020
Os.54898.1.S1_at--188--471Chr03:27252819..27252843 (25 bp)
ATCTGCTCCTTCCATCTTAAATTTT
LOC_Os03g48020
Os.54898.1.S1_at--889--4811Chr03:27252963..27252987 (25 bp)
GCTCTTGTCGAATAGCTTGCTGACG
LOC_Os03g48020
Os.54898.1.S1_at--10--6232Chr03:27253000..27253024 (25 bp)
GAGGCCAGAGCATGGATCTTAGCAG
LOC_Os03g48020
Os.54898.1.S1_at--260--10191Chr03:27253097..27253121 (25 bp)
TATACTGTGCAGTTTACTCCTTCCT
LOC_Os03g48020
Target Sequence 
TTACACGGGCGGCATGAATCCAAGCGAAATCTGATTATATTTTGGTGTGAAGATCATCATTGGCCGCAATGCTGGCAAGT
GCTAGAGATGGTCTATTTACCACAGGTTCTGACAACATCCCCAACCGGTAAGAAAGAAAAGAATCTGAGCATTTTATAGC
CTTATTAACTTGGCTAGTTAAATTTCAATATTTGATATTGATTGTTCTTGTCTCCTCACAAATTATGGGTTTGTATATTC
CTTGTACTGCACGAGTATCTGCTCCTTCCATCTTAAATTTTGCATATGTTAATCACAAGCACCAAAGAAGCCCCCAAGAA
GGCCCTCCGTTCGTTGACGCTGCTGGTCGTCTGGGAGAGATTTGGAATGAAAGAAACCGTAGAACCTTCCAGCAAAAGGA
GCTCTTGTCGAATAGCTTGCTGACGAAAATCAAAGAGGAGGCCAGAGCATGGATCTTAGCAGGAGCAAAACATCTGGGAA
ATTGGCTTATAACTTAGTTTGTTAGGACCAAAGCTTTGGTCCTGTTTTTTCTTTTATACTGTGCAGTTTACTCCTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis