Browse Element(s) Details


Os.54843.1.S1_at

Description gb:AK106886.1
DB_XREF= gi:32992095
TID=Os.54843.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54843 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-F11, full insert sequence.
FL= gb:AK106886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4789611/11Ribosome inactivating protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47850NANA3+27153189..27153791hypothetical protein
LOC_Os03g47860OsAffx.13397.1.S1_at11/113+27157885..27159273Transferase family protein
LOC_Os03g47870NANA3+27161183..27166403retrotransposon protein, putative, unclassified
LOC_Os03g47880NANA3+27168575..27169192retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g47890Os.38395.5.S1_at2/113+27169377..27172506Transposable element protein, putative, MuDR
LOC_Os03g47896Os.54843.1.S1_at11/113+27175431..27176458Ribosome inactivating protein, expressed
LOC_Os03g47896Os.46801.2.S1_x_at1/113+27175431..27176458Ribosome inactivating protein, expressed
LOC_Os03g47902Os.41415.1.S1_at1/113+27177453..27178448hypothetical protein
LOC_Os03g47910NANA3+27182027..27182788expressed protein
LOC_Os03g47920OsAffx.25616.4.S1_at11/113+27184508..27188184hypothetical protein
LOC_Os03g47920OsAffx.21789.1.S1_at2/113+27184508..27188184hypothetical protein
LOC_Os03g47920OsAffx.25616.2.S1_x_at1/113+27184508..27188184hypothetical protein
LOC_Os03g47930Os.2860.1.S1_at11/113+27187647..27200141expressed protein
LOC_Os03g47940Os.12170.1.S1_at11/113+27201111..27205741GDSL-like Lipase/Acylhydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54843.1.S1_at--64--5111Chr03:27175976..27176000 (25 bp)
GCACGTACCGCGAACTCATCGGCGG
LOC_Os03g47896
Os.54843.1.S1_at--684--4171Chr03:27175852..27175876 (25 bp)
CGCCAAGATGGTCGTGGCCAAGTTC
LOC_Os03g47896
Os.54843.1.S1_at--768--7391Chr03:27175824..27175848 (25 bp)
GTGATGGTCACCGAGCCCATGCGGC
LOC_Os03g47896
Os.54843.1.S1_at--358--5771Chr03:27175584..27175608 (25 bp)
GACGACGGCGGAGGCAAGCTATTCA
LOC_Os03g47896
Os.54843.1.S1_at--412--8771Chr03:27175540..27175564 (25 bp)
TGTATATGCACGGTCTGGTCTGATC
LOC_Os03g47896
Os.54843.1.S1_at--267--7811Chr03:27175524..27175548 (25 bp)
GGTCTGATCGGTTCATTGTCGGCAC
LOC_Os03g47896
Os.54843.1.S1_at--167--51Chr03:27175510..27175534 (25 bp)
ATTGTCGGCACTTCCATAATCTGGA
LOC_Os03g47896
Os.54843.1.S1_at--795--6551Chr03:27175483..27175507 (25 bp)
GATTAGGTTGATCTGCACCTGTGTC
LOC_Os03g47896
Os.54843.1.S1_at--558--8851Chr03:27175475..27175499 (25 bp)
TGATCTGCACCTGTGTCTCTGTGTG
LOC_Os03g47896
Os.54843.1.S1_at--1076--3771Chr03:27175459..27175483 (25 bp)
CTCTGTGTGCTCTGCTGCTAATTAA
LOC_Os03g47896
Os.54843.1.S1_at--392--2331Chr03:27175433..27175457 (25 bp)
AAAGTCTCTGCTGTGTTTTGGTTGA
LOC_Os03g47896
Target Sequence 
GCACGTACCGCGAACTCATCGGCGGCGTGGCCAACCTGCGCGCCGTGCCGCTGGGGAGGGCGTCGGCGGAGAGCGCCATG
CGGGTGCTGTCCCGCTACGACCCGGCGACCACCCCGGCCGCCGACGCCAAGATGGTCGTGGCCAAGTTCATGGTGATGGT
CACCGAGCCCATGCGGCTGAAGGCCGTGTCGCGCGCCGTCGGCGGCCGGTGGGAGGAGGAGAGCTACCTGAGCTCCGACG
AGGCCAAGTACGTGCCGTACTGGGGCGAGATATCGGCCATGCTGGTGGAGTGGAACAGCACCGGCCGGTGGGGTGAGCTC
GGCCCCCGGAGCAAGATGGACAGGGCGCGGTGCCCGCGGCCCGCCGGATGCGAGGACGACGGCGGCGACGGCGACGACGG
CGGAGGCAAGCTATTCATGATATAAGATTTCATGATTGTATATGCACGGTCTGGTCTGATCGGTTCATTGTCGGCACTTC
CATAATCTGGAGTGATTAGGTTGATCTGCACCTGTGTCTCTGTGTGCTCTGCTGCTAATTAATAAAGTCTCTGCTGTGTT
TTGGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis