Browse Element(s) Details


OsAffx.13397.1.S1_at

Description tigr:9631.m04658
TID=OsAffx.13397.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative hydroxycinnamoyl transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4786011/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47840NANA3+27131818..27136662retrotransposon protein, putative, unclassified
LOC_Os03g47850NANA3+27153189..27153791hypothetical protein
LOC_Os03g47860OsAffx.13397.1.S1_at11/113+27157885..27159273Transferase family protein
LOC_Os03g47870NANA3+27161183..27166403retrotransposon protein, putative, unclassified
LOC_Os03g47880NANA3+27168575..27169192retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g47890Os.38395.5.S1_at2/113+27169377..27172506Transposable element protein, putative, MuDR
LOC_Os03g47896Os.54843.1.S1_at11/113+27175431..27176458Ribosome inactivating protein, expressed
LOC_Os03g47896Os.46801.2.S1_x_at1/113+27175431..27176458Ribosome inactivating protein, expressed
LOC_Os03g47902Os.41415.1.S1_at1/113+27177453..27178448hypothetical protein
LOC_Os03g47910NANA3+27182027..27182788expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13397.1.S1_at--372--6231Chr03:27158695..27158719 (25 bp)
GGGCGTGGCTACACCACCTTCGAGA
LOC_Os03g47860
OsAffx.13397.1.S1_at--421--7531Chr03:27158699..27158723 (25 bp)
GTGGCTACACCACCTTCGAGAGCCT
LOC_Os03g47860
OsAffx.13397.1.S1_at--1148--8451Chr03:27159079..27159103 (25 bp)
TGGCTGGGCATGAGCTTCTACGACC
LOC_Os03g47860
OsAffx.13397.1.S1_at--205--8651Chr03:27159083..27159107 (25 bp)
TGGGCATGAGCTTCTACGACCTCGA
LOC_Os03g47860
OsAffx.13397.1.S1_at--880--7591Chr03:27159084..27159108 (25 bp)
GGGCATGAGCTTCTACGACCTCGAC
LOC_Os03g47860
OsAffx.13397.1.S1_at--623--1751Chr03:27159146..27159170 (25 bp)
ACCTCGCCATGGAAGGCACCATCTT
LOC_Os03g47860
OsAffx.13397.1.S1_at--718--4331Chr03:27159152..27159176 (25 bp)
CCATGGAAGGCACCATCTTCCTCGT
LOC_Os03g47860
OsAffx.13397.1.S1_at--344--9931Chr03:27159211..27159235 (25 bp)
TACGTGCCACTCTTCGAGAACCATC
LOC_Os03g47860
OsAffx.13397.1.S1_at--921--7271Chr03:27159214..27159238 (25 bp)
GTGCCACTCTTCGAGAACCATCTAG
LOC_Os03g47860
OsAffx.13397.1.S1_at--351--4411Chr03:27159216..27159240 (25 bp)
GCCACTCTTCGAGAACCATCTAGAA
LOC_Os03g47860
OsAffx.13397.1.S1_at--345--3331Chr03:27159218..27159242 (25 bp)
CACTCTTCGAGAACCATCTAGAAGA
LOC_Os03g47860
Target Sequence 
GGGCGTGGCTACACCACCTTCGAGAGCCTCGTCGCCCACCTCTGGCGCGCGGTGACCGCGGCGCGCGGGCTCGGCGCCGC
CGCCACCACCACCAGGGTCCGCATCGCCGTCAACGGCCGCGCCCGCATGCGCCCGCCGGTGCCGCGCGACTACTTCGGCA
ACCTGGTGCTCTGGGCGTTCCCGCGCTGCGACGCCGGCGAGCTCGTCGCGCGCCCGTCGCACCACGCCGCGGAGCTCATC
CACCGCGCCGTGGCGGGCATCGACGACGCCTACTTCCGCTCGTTCGTCGACTTCGCGTCCTCCGGCGCCGTCGAGGCGGA
GGGCCTCGTCCCCACCGCCGACGCCGGCGAGGTGGTGGTGTGCCCGGACATGGAGGTGGACAGCTGGCTGGGCATGAGCT
TCTACGACCTCGACTTCGGCGGCGGCTGCCCCCTGTACTTCATGCCGTCCTACCTCGCCATGGAAGGCACCATCTTCCTC
GTCCCCTCCTTCCTCGGCGACGGCAGCATCGACGTCTACGTGCCACTCTTCGAGAACCATCTAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis