Browse Element(s) Details


Os.46801.2.S1_x_at

Description gb:NM_197831.1
DB_XREF= gi:37537021
TID=Os.46801.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46801 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ribosome inactivating toxin protein (OSJNBa0095C07.27), mRNA.
PROD=putative ribosome inactivating toxin protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4206011/11Ribosome inactivating protein
LOC_Os03g478961/11Ribosome inactivating protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42040Os.46574.1.S1_at11/1110+22277946..22279009expressed protein
LOC_Os10g42050OsAffx.22947.1.S1_x_at8/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.3.S1_x_at3/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.5.S1_x_at2/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42060Os.46801.2.S1_x_at11/1110+22298277..22299164Ribosome inactivating protein
LOC_Os10g42066OsAffx.7903.1.S1_at9/1110+22300114..22301588hypothetical protein
LOC_Os10g42072OsAffx.7903.2.S1_x_at3/1110+22302310..22303149hypothetical protein
LOC_Os10g42080OsAffx.7903.2.S1_at11/1110+22305295..22306113hypothetical protein
LOC_Os10g42080OsAffx.7903.2.S1_x_at11/1110+22305295..22306113hypothetical protein
LOC_Os10g42090Os.49269.1.A1_x_at11/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42090Os.12928.1.S1_x_at10/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42090Os.12928.1.S1_at8/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42100Os.12158.1.S2_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42100Os.12158.1.S1_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42110Os.46089.1.S1_at11/1110+22320335..22324577protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46801.2.S1_x_at--497--6311Chr10:22298565..22298589 (25 bp)
GATGACCAGGCGAAGCTCCTCGTCG
LOC_Os10g42060
Os.46801.2.S1_x_at--1000--952Chr10:22298593..22298617 (25 bp)
AGGACGACGCCTACGTGGCCGGCTT
LOC_Os10g42060
Os.46801.2.S1_x_at--70--4771Chr10:22298710..22298734 (25 bp)
GCAGCTACCGGGACCTCATCGGCGG
LOC_Os10g42060
Os.46801.2.S1_x_at--792--811Chr10:22298787..22298811 (25 bp)
ATGGAGGTGCTCTCCCGGTACGATC
LOC_Os10g42060
Os.46801.2.S1_x_at--600--871Chr10:22298844..22298868 (25 bp)
ATGGCGCTGGCCAAGTTCATGGTGA
LOC_Os10g42060
Os.46801.2.S1_x_at--227--1051Chr10:22298929..22298953 (25 bp)
AGGTGAGCTACCTGAGCTCCGACGA
LOC_Os10g42060
Os.46801.2.S1_x_at--866--1871Chr10:22298950..22298974 (25 bp)
ACGAGGTGAGGGACGTGCCCTACTA
LOC_Os10g42060
Os.46801.2.S1_x_at--848--7631Chr10:22298959..22298983 (25 bp)
GGGACGTGCCCTACTATGGCAAGAT
LOC_Os10g42060
Os.46801.2.S1_x_at--583--5171Chr10:22298977..22299001 (25 bp)
GCAAGATGTCGCTCATGATACTGGA
LOC_Os10g42060
Os.46801.2.S1_x_at--4--8411Chr10:22299033..22299057 (25 bp)
GGCCCTTGGGCCAACATCGACAGGG
LOC_Os10g42060
Os.46801.2.S1_x_at--1103--4351Chr10:22299073..22299097 (25 bp)
CCACCGGCTGCGAGGACGAAGACGA
LOC_Os10g42060
Target Sequence 
GATGACCAGGCGAAGCTCCTCGTCGCGGAGGACGACGCCTACGTGGCCGGCTTCGCCAACCGGACGGGCCACTGGCACAC
GTTCCGCGGCGGCCGCTGCTACCCGGCGCTCCCGGCCACGGCGTGCACCGAGCTCCCGTTCGGGGGCAGCTACCGGGACC
TCATCGGCGGCGTCGCCAACCTGCGCGCCGTGCCGGTGGGGAGGTCGTCGGCGGTGGGCGCGATGGAGGTGCTCTCCCGG
TACGATCCGGCGGCGACCACGGCGGCCGCCGACGCCAAGATGGCGCTGGCCAAGTTCATGGTGATGGTGACGGAGGCGGC
GCGGCTGAAGCCGGTGCGGCGAGCGGTGGTGGAGCGGTGGGAGCAGGTGAGCTACCTGAGCTCCGACGAGGTGAGGGACG
TGCCCTACTATGGCAAGATGTCGCTCATGATACTGGAGTGGAAGAGGACCGGGCGGTGGGGTGAGTTGGGCCCTTGGGCC
AACATCGACAGGGCCCGCTGCCCACGGCCCACCGGCTGCGAGGACGAAGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46801.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis