Browse Element(s) Details


Os.12158.1.S2_at

Description gb:AK120979.1
DB_XREF= gi:37990602
TID=Os.12158.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12158 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pyruvate kinase (OSJNBa0095C07.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041P05, full insert sequence.
FL= gb:AK103375.1 gb:AK120979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4210011/11Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42050OsAffx.22947.1.S1_x_at8/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.3.S1_x_at3/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.5.S1_x_at2/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42060Os.46801.2.S1_x_at11/1110+22298277..22299164Ribosome inactivating protein
LOC_Os10g42066OsAffx.7903.1.S1_at9/1110+22300114..22301588hypothetical protein
LOC_Os10g42072OsAffx.7903.2.S1_x_at3/1110+22302310..22303149hypothetical protein
LOC_Os10g42080OsAffx.7903.2.S1_at11/1110+22305295..22306113hypothetical protein
LOC_Os10g42080OsAffx.7903.2.S1_x_at11/1110+22305295..22306113hypothetical protein
LOC_Os10g42090Os.49269.1.A1_x_at11/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42090Os.12928.1.S1_x_at10/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42090Os.12928.1.S1_at8/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42100Os.12158.1.S2_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42100Os.12158.1.S1_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42110Os.46089.1.S1_at11/1110+22320335..22324577protein kinase family protein, putative, expressed
LOC_Os10g42130Os.21932.1.S1_at11/1110+22339832..22342131no apical meristem, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0004743molecular_functionpyruvate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12158.1.S2_at--1083--7031Chr10:22316568..22316592 (25 bp)
GTAACATTGTTTTCAGGCGGCTCCC
LOC_Os10g42100
Os.12158.1.S2_at--431--5471Chr10:22316593..22316617 (25 bp)
GAACTCAGCCGAAAGGATCAGCAGA
LOC_Os10g42100
Os.12158.1.S2_at--508--8851Chr10:22316634..22316658 (25 bp)
TGAGCTCCCGTACTTAAACCCAACA
LOC_Os10g42100
Os.12158.1.S2_at--139--3071Chr10:22316692..22316716 (25 bp)
AATCTCAAAGCCAGCGAGGCGCAGT
LOC_Os10g42100
Os.12158.1.S2_at--32--7391Chr10:22316726..22316750 (25 bp)
GTGAGTGACACTAGCTCTTGGTGGT
LOC_Os10g42100
Os.12158.1.S2_at--721--6091Chr10:22316774..22316798 (25 bp)
GAGTCTGCCTGTGAGACAGCGAGTT
LOC_Os10g42100
Os.12158.1.S2_at--203--8631Chr10:22316838..22316862 (25 bp)
TGGTGGTGTCACGTCGTCCTGACAT
LOC_Os10g42100
Os.12158.1.S2_at--357--1911Chr10:22316899..22316923 (25 bp)
ACGTGTCGTGCCTGCGAACATGCGA
LOC_Os10g42100
Os.12158.1.S2_at--364--9151Chr10:22316911..22316935 (25 bp)
TGCGAACATGCGACTTTCTTTTTGT
LOC_Os10g42100
Os.12158.1.S2_at--984--9551Chr10:22316927..22316951 (25 bp)
TCTTTTTGTTTATCTCAGCCTGGGC
LOC_Os10g42100
Os.12158.1.S2_at--982--1771Chr10:22317008..22317032 (25 bp)
ACCGTGGTTACTGGATTTATTGCGA
LOC_Os10g42100
Target Sequence 
GTAACATTGTTTTCAGGCGGCTCCCGAACTCAGCCGAAAGGATCAGCAGATGAAGCATGTGGGGCATGAGCTCCCGTACT
TAAACCCAACAAACAAACCGAGGATAGGAGGAGATGCAAATCAAAATCTCAAAGCCAGCGAGGCGCAGTGCTGTCAGTGT
GAGTGACACTAGCTCTTGGTGGTGGAGACAGCGCACGAGAGGAGGGGAGTCTGCCTGTGAGACAGCGAGTTGACTTGGGG
TGTGGGGGTGTCAGGGCGCGGGTCCCGGCCTGGTGGTGTCACGTCGTCCTGACATGTGGGGCCCAGCAAAAGGAGGATCG
CCGGCAAGCCCACGTGTCGTGCCTGCGAACATGCGACTTTCTTTTTGTTTATCTCAGCCTGGGCGCGGGTGTAGACGTAG
TAGGGGCAGAGTTTCCCTTACCGCCGGTAACCGCGCGGTTACCGTGGTTACTGGATTTATTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12158.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis