Browse Element(s) Details


OsAffx.7903.1.S1_at

Description tigr:9638.m03844
TID=OsAffx.7903.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g420669/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42040Os.46574.1.S1_at11/1110+22277946..22279009expressed protein
LOC_Os10g42050OsAffx.22947.1.S1_x_at8/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.3.S1_x_at3/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.5.S1_x_at2/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42060Os.46801.2.S1_x_at11/1110+22298277..22299164Ribosome inactivating protein
LOC_Os10g42066OsAffx.7903.1.S1_at9/1110+22300114..22301588hypothetical protein
LOC_Os10g42072OsAffx.7903.2.S1_x_at3/1110+22302310..22303149hypothetical protein
LOC_Os10g42080OsAffx.7903.2.S1_at11/1110+22305295..22306113hypothetical protein
LOC_Os10g42080OsAffx.7903.2.S1_x_at11/1110+22305295..22306113hypothetical protein
LOC_Os10g42090Os.49269.1.A1_x_at11/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42090Os.12928.1.S1_x_at10/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42090Os.12928.1.S1_at8/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42100Os.12158.1.S2_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42100Os.12158.1.S1_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42110Os.46089.1.S1_at11/1110+22320335..22324577protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7903.1.S1_at--715--1411Chr10:22301610..22301793 (25 bp)
AGACAAGAGCAGCAGTGGCCGCCCA
NONE
OsAffx.7903.1.S1_at--303--8051Chr10:22301505..22301529 (25 bp)
GGAGATCCAGATTGACCCAGGCGTC
LOC_Os10g42066
OsAffx.7903.1.S1_at--635--7231Chr10:22301266..22301507 (25 bp)
GTCGCCATTCCCAGAGGGCCGGATG
LOC_Os10g42066
OsAffx.7903.1.S1_at--453--8611Chr10:22301211..22301235 (25 bp)
TGGTGAAGCTGCAGCGCCCCAAGTT
LOC_Os10g42066
OsAffx.7903.1.S1_at--505--1651Chr10:22301199..22301223 (25 bp)
AGCGCCCCAAGTTCGAGTTCGAGCA
LOC_Os10g42066
OsAffx.7903.1.S1_at--1034--7911Chr10:22301171..22301195 (25 bp)
GGATTGGGATTACATCTCCTGGCCT
LOC_Os10g42066
OsAffx.7903.1.S1_at--1084--4011NONE
CGTCTCGACGCGAATCTGCAGATGA
NONE
OsAffx.7903.1.S1_at--943--5651Chr10:22300353..22300377 (25 bp)
GACAGTGATCCGGAGGCGACATTTG
LOC_Os10g42066
OsAffx.7903.1.S1_at--1037--4471Chr10:22300295..22300319 (25 bp)
GCCGGAGTACACTGCAGCTGAACAA
LOC_Os10g42066
OsAffx.7903.1.S1_at--615--5851Chr10:22300221..22300245 (25 bp)
GACCAAGACATGTTCGTGGCGTCCC
LOC_Os10g42066
OsAffx.7903.1.S1_at--519--1871Chr10:22300181..22300205 (25 bp)
ACGAGCCCACCGGATGCAGGAGCAG
LOC_Os10g42066
Target Sequence 
AGACAAGAGCAGCAGTGGCCGCCCAGGAGGGAGAGAGAGAGCGAGAATGGAGCGCGAGGCGCAGGGGTTGAGACGCAGGA
GGAGCATGGGCGGCCGGTTCAGAGCGGAGATCCAGATTGACCCAGGCGTCGCCATTCCCAGAGGGCCGGATGCCGGGTTC
GCCGCCGCCGTGCGAGAGCCGCTGGTGAAGCTGCAGCGCCCCAAGTTCGAGTTCGAGCAGTGGGATTGGGATTACATCTC
CTGGCCTCACGACCGTCTCGACGCGAATCTGCAGATGAGGGACAGTGATCCGGAGGCGACATTTGAGGCAGACAGGAAGG
CGAGCGACGAGTTCCTGCGCCGGAGTACACTGCAGCTGAACAAGTGTGAGAGGGATCGGCGAAAGCCGGAGCAGCAGGAC
ATGGAGCTGGAGGACCAAGACATGTTCGTGGCGTCCCTGCTTCATGTCGACGACGAGCCCACCGGATGCAGGAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis