Browse Element(s) Details


Os.46574.1.S1_at

Description gb:AK063193.1
DB_XREF= gi:32973211
TID=Os.46574.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46574 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0095C07.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-B12, full insert sequence.
FL= gb:AK063193.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4204011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41999Os.46393.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46393.1.S1_x_at10/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_x_at8/1110+22249213..22253609expressed protein
LOC_Os10g42020OsAffx.29329.1.S1_x_at11/1110+22258147..22262443expressed protein
LOC_Os10g42020OsAffx.29329.1.S1_at11/1110+22258147..22262443expressed protein
LOC_Os10g42020Os.16615.1.S1_at7/1110+22258147..22262443expressed protein
LOC_Os10g42020OsAffx.29329.2.S1_x_at5/1110+22258147..22262443expressed protein
LOC_Os10g42024NANA10+22262872..22263237NA
LOC_Os10g42030OsAffx.18604.1.S1_at10/1110+22265389..22271637expressed protein
LOC_Os10g42030OsAffx.18604.1.S1_x_at9/1110+22265389..22271637expressed protein
LOC_Os10g42040Os.46574.1.S1_at11/1110+22277946..22279009expressed protein
LOC_Os10g42050OsAffx.22947.1.S1_x_at8/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.3.S1_x_at3/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.5.S1_x_at2/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42060Os.46801.2.S1_x_at11/1110+22298277..22299164Ribosome inactivating protein
LOC_Os10g42066OsAffx.7903.1.S1_at9/1110+22300114..22301588hypothetical protein
LOC_Os10g42072OsAffx.7903.2.S1_x_at3/1110+22302310..22303149hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46574.1.S1_at--814--3831Chr10:22278058..22278082 (25 bp)
CTGCTGCTGTAGTGTCGCTTTGTAA
LOC_Os10g42040
Os.46574.1.S1_at--856--911Chr10:22278773..22278797 (25 bp)
AGGCTCACCATGACAACCTGCATAT
LOC_Os10g42040
Os.46574.1.S1_at--1141--3511Chr10:22278781..22278805 (25 bp)
CATGACAACCTGCATATGCCTCTGC
LOC_Os10g42040
Os.46574.1.S1_at--1046--251Chr10:22278794..22278818 (25 bp)
ATATGCCTCTGCTCTAGCGCGCTAG
LOC_Os10g42040
Os.46574.1.S1_at--113--3691Chr10:22278815..22278839 (25 bp)
CTAGGCCGCCCATGGCCATGCGGTA
LOC_Os10g42040
Os.46574.1.S1_at--982--871Chr10:22278826..22278850 (25 bp)
ATGGCCATGCGGTACACTTTCATGC
LOC_Os10g42040
Os.46574.1.S1_at--217--2191Chr10:22278839..22278863 (25 bp)
ACACTTTCATGCATGGCTTGTCTAC
LOC_Os10g42040
Os.46574.1.S1_at--302--5011Chr10:22278849..22278873 (25 bp)
GCATGGCTTGTCTACATATATATTA
LOC_Os10g42040
Os.46574.1.S1_at--457--1111Chr10:22278875..22278899 (25 bp)
AGTGTACGATCGATGTATGATATAT
LOC_Os10g42040
Os.46574.1.S1_at--127--711Chr10:22278891..22278915 (25 bp)
ATGATATATATACTTGTCGTCGTAA
LOC_Os10g42040
Os.46574.1.S1_at--902--10351Chr10:22278952..22278976 (25 bp)
TTTTTGAACGAATATACCATGCTAT
LOC_Os10g42040
Target Sequence 
CTGCTGCTGTAGTGTCGCTTTGTAAGGTCCTTCTGATGGTCATAGGGCTCATCTGCGCCCTGCACACTGCCACCGTAGAA
GGAGGAAGAGCGCTAGCGGCAGCGGCAGTTGGTGGTACTGGTGTGGACTTGCCACCAACTGCACCAAGCTACTCCAGCAA
GTGCAGATATCCCTACAAATGCCCCCCTGCAGGCTCACCATGACAACCTGCATATGCCTCTGCTCTAGCGCGCTAGGCCG
CCCATGGCCATGCGGTACACTTTCATGCATGGCTTGTCTACATATATATTATAGTGTACGATCGATGTATGATATATATA
CTTGTCGTCGTAAATAAAGGGAGGCCAAATATGTATTTGTAAGCTTAATTTTTTGAACGAATATACCATGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis