Browse Element(s) Details


OsAffx.29329.2.S1_x_at

Description tigr:9636.m02397
TID=OsAffx.29329.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2448011/11hAT family dimerisation domain containing protein
LOC_Os10g420205/11expressed protein
LOC_Os01g667302/11Exosome complex exonuclease RRP40, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24434Os.54383.1.S1_at11/118+14627447..14633423expressed protein
LOC_Os08g24450OsAffx.30966.3.A1_x_at11/118+14635916..14643574AT hook motif-containing protein, putative
LOC_Os08g24460OsAffx.19287.2.S1_s_at11/118+14644658..14646629hypothetical protein
LOC_Os08g24470OsAffx.31415.1.S1_at11/118+14647145..14650016hypothetical protein
LOC_Os08g24470OsAffx.31415.2.S1_s_at11/118+14647145..14650016hypothetical protein
LOC_Os08g24480OsAffx.29329.2.S1_x_at11/118+14654116..14656554hAT family dimerisation domain containing protein
LOC_Os08g24480OsAffx.29329.1.S1_x_at5/118+14654116..14656554hAT family dimerisation domain containing protein
LOC_Os08g24480OsAffx.29329.1.S1_at1/118+14654116..14656554hAT family dimerisation domain containing protein
LOC_Os08g24490OsAffx.8980.1.S1_at3/118+14661120..14662622retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g24500Os.27639.1.S1_x_at3/118+14663513..14665285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g24510OsAffx.17130.1.S1_at11/118+14670359..14670574hypothetical protein
LOC_Os08g24520NANA8+14673807..14676712transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24530OsAffx.22896.1.S1_x_at1/118+14680789..14684535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24530OsAffx.940.1.S1_x_at1/118+14680789..14684535retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29329.2.S1_x_at--1036--7891Chr08:14655078..14655102 (25 bp)
GGTTCTCATTGCCTAACAATATTGT
LOC_Os08g24480
OsAffx.29329.2.S1_x_at--471--3154Chr10:22261123..22261147 (25 bp)
AATTCATTTGCCTCTTATGATGCAC
LOC_Os10g42020
OsAffx.29329.2.S1_x_at--1042--2694Chr10:22261159..22261183 (25 bp)
AAGCTTGCCAAGTTTTATCCAAAAG
LOC_Os10g42020
OsAffx.29329.2.S1_x_at--491--2371Chr08:14654482..14654506 (25 bp)
AAAAGACTTTTCAGACATGGATTTG
LOC_Os08g24480
OsAffx.29329.2.S1_x_at--667--6431Chr08:14654458..14654482 (25 bp)
GATCATACTTAAATTGCAACTTGGG
LOC_Os08g24480
OsAffx.29329.2.S1_x_at--35--2314Chr10:22261264..22261288 (25 bp)
AAAGGCCTAGAAACTCTTGCTGAGC
LOC_Os10g42020
OsAffx.29329.2.S1_x_at--744--4751Chr08:14654379..14654403 (25 bp)
GCTGAGCTCTCTATCAAACTTGTTG
LOC_Os08g24480
OsAffx.29329.2.S1_x_at--384--6611Chr08:14654331..14654355 (25 bp)
GATTGTGTCTATTTACTTCTCAAGT
LOC_Os08g24480
OsAffx.29329.2.S1_x_at--145--6151Chr08:14654269..14654293 (25 bp)
GAGGGTGTTTTCTACATTGAGTGTA
LOC_Os08g24480
OsAffx.29329.2.S1_x_at--485--10352Chr10:22261477..22261501 (25 bp)
TTTATTGAGCGGGATGTCTTCTCTC
LOC_Os10g42020
OsAffx.29329.2.S1_x_at--1050--7992Chr10:22261488..22261512 (25 bp)
GGATGTCTTCTCTCAAGTTAGCGAA
LOC_Os10g42020
Target Sequence 
GGTTCTCATTGCCTAACAATATTGTATATTATTGCATTAAATCCATTTAATTCATTTGCCTCTTATGATGCACAGCAAAT
ACTTAAGCTTGCCAAGTTTTATCCAAAAGACTTTTCAGACATGGATTTGATCATACTTAAATTGCAACTTGGGACTTTTA
TTGATGATATGAGAAAAGATGAAAGGTTCAAAGGCCTAGAAACTCTTGCTGAGCTCTCTATCAAACTTGTTGAAACAAAC
AAGCATGTTCTTTATGATTGTGTCTATTTACTTCTCAAGTTGGTATTGATATTACCTGTAGCAACAACAAGTGTTGAGAG
GGTGTTTTCTACATTGAGTGTAGTGAAGACCAAGCTGAGAAATATTATATGTGACAAATTATTGAATGAATGTTTAATCA
CATTTATTGAGCGGGATGTCTTCTCTCAAGTTAGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29329.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis