Browse Element(s) Details


OsAffx.29329.1.S1_x_at

Description gb:NM_197827.1
DB_XREF= gi:37537013
TID=OsAffx.29329.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposase (OSJNBa0095C07.21), mRNA.
PROD=putative transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4202011/11expressed protein
LOC_Os08g244805/11hAT family dimerisation domain containing protein
LOC_Os01g667302/11Exosome complex exonuclease RRP40, putative, expressed
LOC_Os12g072601/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41950Os.50905.1.S1_at11/1110+22232554..22233379expressed protein
LOC_Os10g41960Os.37950.1.S1_at11/1110+22233675..22238062Eukaryotic translation initiation factor 3 subunit 9, putative, expressed
LOC_Os10g41970Os.46479.2.S1_x_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41970Os.46479.1.S1_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41980Os.4152.1.S1_at11/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46616.1.S1_x_at6/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46393.1.S1_x_at4/1110+22245523..22246842expressed protein
LOC_Os10g41999Os.46393.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46393.1.S1_x_at10/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_x_at8/1110+22249213..22253609expressed protein
LOC_Os10g42020OsAffx.29329.1.S1_x_at11/1110+22258147..22262443expressed protein
LOC_Os10g42020OsAffx.29329.1.S1_at11/1110+22258147..22262443expressed protein
LOC_Os10g42020Os.16615.1.S1_at7/1110+22258147..22262443expressed protein
LOC_Os10g42020OsAffx.29329.2.S1_x_at5/1110+22258147..22262443expressed protein
LOC_Os10g42024NANA10+22262872..22263237NA
LOC_Os10g42030OsAffx.18604.1.S1_at10/1110+22265389..22271637expressed protein
LOC_Os10g42030OsAffx.18604.1.S1_x_at9/1110+22265389..22271637expressed protein
LOC_Os10g42040Os.46574.1.S1_at11/1110+22277946..22279009expressed protein
LOC_Os10g42050OsAffx.22947.1.S1_x_at8/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.3.S1_x_at3/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.5.S1_x_at2/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29329.1.S1_x_at--158--9293Chr10:22260984..22261008 (25 bp)
TCCGGACCAAACAAATGATGATCAT
LOC_Os10g42020
OsAffx.29329.1.S1_x_at--881--9972Chr10:22261047..22261071 (25 bp)
TAGCCAAGAGCTCAATAGTAGGTTT
LOC_Os10g42020
OsAffx.29329.1.S1_x_at--1010--8211Chr10:22261086..22261110 (25 bp)
GGAATTGCTCATTTGCATGTCAGCA
LOC_Os10g42020
OsAffx.29329.1.S1_x_at--645--4991Chr10:22261100..22261124 (25 bp)
GCATGTCAGCATTGAATCCATTCAA
LOC_Os10g42020
OsAffx.29329.1.S1_x_at--472--3154Chr10:22261123..22261147 (25 bp)
AATTCATTTGCCTCTTATGATGCAC
LOC_Os10g42020
OsAffx.29329.1.S1_x_at--1041--2694Chr10:22261159..22261183 (25 bp)
AAGCTTGCCAAGTTTTATCCAAAAG
LOC_Os10g42020
OsAffx.29329.1.S1_x_at--618--3251Chr10:22261190..22261214 (25 bp)
CAACCATGGATTTGATCAGACTAGA
LOC_Os10g42020
OsAffx.29329.1.S1_x_at--357--1434Chr10:22261272..22261296 (25 bp)
AGAAACTCTTGCTGAGCTCTCTATT
LOC_Os10g42020
OsAffx.29329.1.S1_x_at--26--6613Chr10:22261330..22261354 (25 bp)
GATTGGGTCTATTTACTTCTCAAGT
LOC_Os10g42020
OsAffx.29329.1.S1_x_at--144--6151Chr10:22261392..22261416 (25 bp)
GAGGGTGTTTTCTGCATTGAGTGTA
LOC_Os10g42020
OsAffx.29329.1.S1_x_at--1049--7992Chr10:22261488..22261512 (25 bp)
GGATGTCTTCTCTCAAGTTAGCGAA
LOC_Os10g42020
Target Sequence 
TCCGGACCAAACAAATGATGATCATTTTAGAAGAGAAGTGTACATTGGTGTGATTGATAAAATTAGCCAAGAGCTCAATA
GTAGGTTTGATGAGGTTAATATGGAATTGCTCATTTGCATGTCAGCATTGAATCCATTCAATTCATTTGCCTCTTATGAT
GCACAACAAGTACTTAAGCTTGCCAAGTTTTATCCAAAAGAGTTTTCAACCATGGATTTGATCAGACTAGAAATGCAACT
TGGGACTTTTATTGATGATATGAGAAGAGATGAAAGGTTCAAAGGCCTAGAAACTCTTGCTGAGCTCTCTATTAAACTTG
TTGAAACAAACAAGCATGTTCTTTATGATTGGGTCTATTTACTTCTCAAGTTGGTATTGATATTACCTGTAGCAACAGCA
AGTGTTGAGAGGGTGTTTTCTGCATTGAGTGTAGTGAAGAGCAAGCTGAGAAATAGTATGTGTGACAAATTATTGAATGA
TTGTTTAATCACATTTATTGAGCGGGATGTCTTCTCTCAAGTTAGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29329.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis