Browse Element(s) Details


Os.46616.1.S1_at

Description gb:BQ529575
DB_XREF= gi:27597111
DB_XREF=08B1207016.40D9.T3.seq
TID=Os.46616.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pathogen-related protein Rir1b (OSJNBa0095C07.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4199911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41930Os.4741.2.S1_x_at11/1110+22226085..22228326haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os10g41940Os.9077.1.S1_at10/1110+22228657..22232194expressed protein
LOC_Os10g41950Os.50905.1.S1_at11/1110+22232554..22233379expressed protein
LOC_Os10g41960Os.37950.1.S1_at11/1110+22233675..22238062Eukaryotic translation initiation factor 3 subunit 9, putative, expressed
LOC_Os10g41970Os.46479.2.S1_x_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41970Os.46479.1.S1_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41980Os.4152.1.S1_at11/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46616.1.S1_x_at6/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46393.1.S1_x_at4/1110+22245523..22246842expressed protein
LOC_Os10g41999Os.46393.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46393.1.S1_x_at10/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_x_at8/1110+22249213..22253609expressed protein
LOC_Os10g42020OsAffx.29329.1.S1_x_at11/1110+22258147..22262443expressed protein
LOC_Os10g42020OsAffx.29329.1.S1_at11/1110+22258147..22262443expressed protein
LOC_Os10g42020Os.16615.1.S1_at7/1110+22258147..22262443expressed protein
LOC_Os10g42020OsAffx.29329.2.S1_x_at5/1110+22258147..22262443expressed protein
LOC_Os10g42024NANA10+22262872..22263237NA
LOC_Os10g42030OsAffx.18604.1.S1_at10/1110+22265389..22271637expressed protein
LOC_Os10g42030OsAffx.18604.1.S1_x_at9/1110+22265389..22271637expressed protein
LOC_Os10g42040Os.46574.1.S1_at11/1110+22277946..22279009expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46616.1.S1_at--1135--6491Chr10:22252637..22252661 (25 bp)
GATAGTAATGAGGACGCAACGCAGC
LOC_Os10g41999
Os.46616.1.S1_at--203--7031Chr10:22252641..22252665 (25 bp)
GTAATGAGGACGCAACGCAGCTACC
LOC_Os10g41999
Os.46616.1.S1_at--821--2991Chr10:22252643..22252667 (25 bp)
AATGAGGACGCAACGCAGCTACCTT
LOC_Os10g41999
Os.46616.1.S1_at--104--6191Chr10:22252646..22252670 (25 bp)
GAGGACGCAACGCAGCTACCTTTGC
LOC_Os10g41999
Os.46616.1.S1_at--603--5791Chr10:22252649..22252673 (25 bp)
GACGCAACGCAGCTACCTTTGCAAG
LOC_Os10g41999
Os.46616.1.S1_at--924--5151Chr10:22252652..22252676 (25 bp)
GCAACGCAGCTACCTTTGCAAGGTG
LOC_Os10g41999
Os.46616.1.S1_at--614--2591Chr10:22252654..22252678 (25 bp)
AACGCAGCTACCTTTGCAAGGTGCT
LOC_Os10g41999
Os.46616.1.S1_at--75--4271Chr10:22252706..22252730 (25 bp)
CCTGCACACTGCCTCGGTACAAGGA
LOC_Os10g41999
Os.46616.1.S1_at--1086--9011Chr10:22252708..22252732 (25 bp)
TGCACACTGCCTCGGTACAAGGAGG
LOC_Os10g41999
Os.46616.1.S1_at--695--3331Chr10:22252712..22252732 (21 bp)
CACTGCCTCGGTACAAGGAGGGAGA
LOC_Os10g41999
Os.46616.1.S1_at--778--1511Chr10:22252976..22253000 (25 bp)
AGCAGCAGATGCAATTGGTAGGAAC
LOC_Os10g41999
Target Sequence 
GATAGTAATGAGGACGCAACGCAGCTACCTTTGCAAGGTGCTCCTGATGGTCCTCGCCCTCATCTGCACCCTGCACACTG
CCTCGGTACAAGGAGGGAGAGCAGGAGCAGCAGATGCAATTGGTAGGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis