Browse Element(s) Details


Os.9077.1.S1_at

Description gb:NM_197820.1
DB_XREF= gi:37536999
TID=Os.9077.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=5
UG=Os.9077 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0095C07.2), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4194010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41870Os.53785.1.S1_at11/1110+22201456..22204690expressed protein
LOC_Os10g41880OsAffx.14308.1.S1_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41880OsAffx.14308.1.S1_x_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41900OsAffx.7905.1.S1_at11/1110+22215169..22219060NB-ARC domain containing protein
LOC_Os10g41910OsAffx.30749.1.S1_at11/1110+22219464..22220513hypothetical protein
LOC_Os10g41920OsAffx.30750.1.S1_at11/1110+22222678..22223124hypothetical protein
LOC_Os10g41920OsAffx.9822.1.S1_x_at1/1110+22222678..22223124hypothetical protein
LOC_Os10g41930Os.4741.2.S1_x_at11/1110+22226085..22228326haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os10g41940Os.9077.1.S1_at10/1110+22228657..22232194expressed protein
LOC_Os10g41950Os.50905.1.S1_at11/1110+22232554..22233379expressed protein
LOC_Os10g41960Os.37950.1.S1_at11/1110+22233675..22238062Eukaryotic translation initiation factor 3 subunit 9, putative, expressed
LOC_Os10g41970Os.46479.2.S1_x_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41970Os.46479.1.S1_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41980Os.4152.1.S1_at11/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46616.1.S1_x_at6/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46393.1.S1_x_at4/1110+22245523..22246842expressed protein
LOC_Os10g41999Os.46393.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46393.1.S1_x_at10/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_x_at8/1110+22249213..22253609expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9077.1.S1_at--878--6111Chr10:22229180..22229204 (25 bp)
GAGGGAGCTGACTGACTTCATGGCC
LOC_Os10g41940
Os.9077.1.S1_at--1039--3651Chr10:22229195..22229219 (25 bp)
CTTCATGGCCACACCTATTGGGAGA
LOC_Os10g41940
Os.9077.1.S1_at--43--7651NONE
GGGAGAGCTTTCACTACGATCTTTT
NONE
Os.9077.1.S1_at--320--10551Chr10:22231273..22231297 (25 bp)
TTCATTTGGTTTGCACTGTCAGGAT
LOC_Os10g41940
Os.9077.1.S1_at--984--10351Chr10:22231316..22231340 (25 bp)
TTTTTGGTACATTTGTCCTGCCTTT
LOC_Os10g41940
Os.9077.1.S1_at--543--4351Chr10:22231348..22231372 (25 bp)
CCACTTCTCCTTGGGACATTTGGTA
LOC_Os10g41940
Os.9077.1.S1_at--897--591Chr10:22231864..22231888 (25 bp)
ATGCCCAGCGTGCAAACGGAGGTTT
LOC_Os10g41940
Os.9077.1.S1_at--556--7471Chr10:22231889..22231913 (25 bp)
GTGGGTTACCGCAACCAAGTGATTC
LOC_Os10g41940
Os.9077.1.S1_at--535--7531Chr10:22231939..22231963 (25 bp)
GTGGCAGCCAAACAATAGGTCCTCT
LOC_Os10g41940
Os.9077.1.S1_at--1054--5011Chr10:22231974..22231998 (25 bp)
GCAGTTCAAGAAGCTCAGGGCCTGA
LOC_Os10g41940
Os.9077.1.S1_at--302--731Chr10:22232034..22232058 (25 bp)
ATGTTGTTACAACGTGCACCAGCAA
LOC_Os10g41940
Target Sequence 
GAGGGAGCTGACTGACTTCATGGCCACACCTATTGGGAGAGCTTTCACTACGATCTTTTTCATTTGGTTTGCACTGTCAG
GATGGCTATTCAGAGTTTTCATTTTTGGTACATTTGTCCTGCCTTTTGCTGCGCCACTTCTCCTTGGGACATTTGGTAAT
CGGGTCGCCATTGAGGGGACATGCCCAGCGTGCAAACGGAGGTTTGTGGGTTACCGCAACCAAGTGATTCGGTGCATGAA
TTGCCAAAACATAGTGTGGCAGCCAAACAATAGGTCCTCTGGACGAGCCAGCAGTTCAAGAAGCTCAGGGCCTGATGTTA
TTGATGTGGAGTTTGAGGAGAAGTAAGAACATGTTGTTACAACGTGCACCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis