Browse Element(s) Details


Os.4741.2.S1_x_at

Description gb:NM_197819.1
DB_XREF= gi:37536997
TID=Os.4741.2
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4741 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative beta-phosphoglucomutase (OSJNBa0095C07.1), mRNA.
PROD=putative beta-phosphoglucomutase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4193011/11haloacid dehalogenase-like hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41870Os.53785.1.S1_at11/1110+22201456..22204690expressed protein
LOC_Os10g41880OsAffx.14308.1.S1_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41880OsAffx.14308.1.S1_x_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41900OsAffx.7905.1.S1_at11/1110+22215169..22219060NB-ARC domain containing protein
LOC_Os10g41910OsAffx.30749.1.S1_at11/1110+22219464..22220513hypothetical protein
LOC_Os10g41920OsAffx.30750.1.S1_at11/1110+22222678..22223124hypothetical protein
LOC_Os10g41920OsAffx.9822.1.S1_x_at1/1110+22222678..22223124hypothetical protein
LOC_Os10g41930Os.4741.2.S1_x_at11/1110+22226085..22228326haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os10g41940Os.9077.1.S1_at10/1110+22228657..22232194expressed protein
LOC_Os10g41950Os.50905.1.S1_at11/1110+22232554..22233379expressed protein
LOC_Os10g41960Os.37950.1.S1_at11/1110+22233675..22238062Eukaryotic translation initiation factor 3 subunit 9, putative, expressed
LOC_Os10g41970Os.46479.2.S1_x_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41970Os.46479.1.S1_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41980Os.4152.1.S1_at11/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46616.1.S1_x_at6/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46393.1.S1_x_at4/1110+22245523..22246842expressed protein
LOC_Os10g41999Os.46393.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46393.1.S1_x_at10/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_x_at8/1110+22249213..22253609expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009231biological_processriboflavin biosynthesis
GO:0003919molecular_functionFMN adenylyltransferase activity
GO:0008531molecular_functionriboflavin kinase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4741.2.S1_x_at--566--7931Chr10:22227729..22227753 (25 bp)
GGATTCGAGCCGGTGTAGCTGCAAA
LOC_Os10g41930
Os.4741.2.S1_x_at--757--2991Chr10:22227752..22227776 (25 bp)
AATGTTCCTGTAGTTGGTCTGACAA
LOC_Os10g41930
Os.4741.2.S1_x_at--561--5811Chr10:22227839..22227863 (25 bp)
GACCCAAAGCTACTGTCCATACTTG
LOC_Os10g41930
Os.4741.2.S1_x_at--1119--1331Chr10:22227865..22227889 (25 bp)
AGAGATAGAACCTACGGTTGCCGCC
LOC_Os10g41930
Os.4741.2.S1_x_at--889--4211Chr10:22227885..22227909 (25 bp)
CCGCCGTCGAGCAAGTCTGATTTTT
LOC_Os10g41930
Os.4741.2.S1_x_at--1054--7691Chr10:22228034..22228058 (25 bp)
GGGTCAGCACACGTCTTAGGACTTT
LOC_Os10g41930
Os.4741.2.S1_x_at--968--5831Chr10:22228073..22228097 (25 bp)
GACCATCATCTGTGCATGTGACTTG
LOC_Os10g41930
Os.4741.2.S1_x_at--502--7371Chr10:22228090..22228114 (25 bp)
GTGACTTGCTGTAAAAACTCCTGTA
LOC_Os10g41930
Os.4741.2.S1_x_at--321--2391Chr10:22228117..22228141 (25 bp)
AAACTCCCAGTATGCATATTGCCGA
LOC_Os10g41930
Os.4741.2.S1_x_at--1096--191Chr10:22228221..22228245 (25 bp)
ATTTGCTATCTTTTGTTGGAAACGC
LOC_Os10g41930
Os.4741.2.S1_x_at--844--8151Chr10:22228238..22228262 (25 bp)
GGAAACGCATCTACTGAATTGTGGT
LOC_Os10g41930
Target Sequence 
GGATTCGAGCCGGTGTAGCTGCAAATGTTCCTGTAGTTGGTCTGACAACTAGGAATCCAGAGAAAGTTCTGCAAGATGCA
GGAGCAAGCTTGCTGATAAAAGATTTCCAGGACCCAAAGCTACTGTCCATACTTGAAGAGATAGAACCTACGGTTGCCGC
CGTCGAGCAAGTCTGATTTTTGCAGATGGAGCAATGGAATTCTGGAGTACTAGATGGAGCATTTTTTGCAGATGGAACAT
GAATACTGGAATAATTATACATCTGTCTATCCTAACAAAATAAAGCTGATTTCTAGATGGGGCCGGGGTCAGCACACGTC
TTAGGACTTTTGAGTTTGTCAATTGACCATCATCTGTGCATGTGACTTGCTGTAAAAACTCCTGTAAAAAACTCCCAGTA
TGCATATTGCCGAAAATAACTGTAATGTATGTTTACATGGTTTGATAGAANNAAANANNNNNANNAAAATGGCTATATAG
TTTATCAGTTGAATTTGCTATCTTTTGTTGGAAACGCATCTACTGAATTGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4741.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis