Browse Element(s) Details


OsAffx.7905.1.S1_at

Description tigr:9638.m03827
TID=OsAffx.7905.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative disease resistant protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4190011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41850Os.11475.2.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_x_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.27237.3.A1_x_at1/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41860Os.11475.1.S1_a_at11/1110+22192336..22195173expressed protein
LOC_Os10g41860Os.11475.1.S1_at11/1110+22192336..22195173expressed protein
LOC_Os10g41870Os.53785.1.S1_at11/1110+22201456..22204690expressed protein
LOC_Os10g41880OsAffx.14308.1.S1_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41880OsAffx.14308.1.S1_x_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41900OsAffx.7905.1.S1_at11/1110+22215169..22219060NB-ARC domain containing protein
LOC_Os10g41910OsAffx.30749.1.S1_at11/1110+22219464..22220513hypothetical protein
LOC_Os10g41920OsAffx.30750.1.S1_at11/1110+22222678..22223124hypothetical protein
LOC_Os10g41920OsAffx.9822.1.S1_x_at1/1110+22222678..22223124hypothetical protein
LOC_Os10g41930Os.4741.2.S1_x_at11/1110+22226085..22228326haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os10g41940Os.9077.1.S1_at10/1110+22228657..22232194expressed protein
LOC_Os10g41950Os.50905.1.S1_at11/1110+22232554..22233379expressed protein
LOC_Os10g41960Os.37950.1.S1_at11/1110+22233675..22238062Eukaryotic translation initiation factor 3 subunit 9, putative, expressed
LOC_Os10g41970Os.46479.2.S1_x_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41970Os.46479.1.S1_at11/1110+22239213..22243571Methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7905.1.S1_at--599--7471Chr10:22215702..22215726 (25 bp)
GTGGGCTACGGCAAGACTCTGAACT
LOC_Os10g41900
OsAffx.7905.1.S1_at--923--4971Chr10:22215620..22215644 (25 bp)
GCATCGATAGGTTGCCCAGCTGGAT
LOC_Os10g41900
OsAffx.7905.1.S1_at--1114--4811Chr10:22215589..22215613 (25 bp)
GCTCACATACCTTGTTCAGTTCAAC
LOC_Os10g41900
OsAffx.7905.1.S1_at--188--10631Chr10:22215531..22215555 (25 bp)
TTCGATGTCCTGTGTGAGTTGCCCA
LOC_Os10g41900
OsAffx.7905.1.S1_at--982--1831Chr10:22215451..22215475 (25 bp)
ACGCACTAGACACAGGTTTCCGGAG
LOC_Os10g41900
OsAffx.7905.1.S1_at--878--6831Chr10:22215436..22215460 (25 bp)
GTTTCCGGAGCTCATCACTTTAAGA
LOC_Os10g41900
OsAffx.7905.1.S1_at--525--3271Chr10:22215398..22215422 (25 bp)
CAAAGCTTCCCAATGTTATTCGGTT
LOC_Os10g41900
OsAffx.7905.1.S1_at--479--5971Chr10:22215348..22215372 (25 bp)
GAGAACCTGCTAGTTAACTTCACTG
LOC_Os10g41900
OsAffx.7905.1.S1_at--1131--1251Chr10:22215308..22215332 (25 bp)
AGATTATTGGCATCAGGCACCTGAC
LOC_Os10g41900
OsAffx.7905.1.S1_at--387--6011Chr10:22215252..22215276 (25 bp)
GAGAGCAACCTTGCACTACATCGTG
LOC_Os10g41900
OsAffx.7905.1.S1_at--555--2791Chr10:22215201..22215225 (25 bp)
AAGAGGCGCCTTTTTGAGTCCAGTA
LOC_Os10g41900
Target Sequence 
GTGGGCTACGGCAAGACTCTGAACTTTCTCGACCAGCTCCCCTCGCCGCCACAACTTCTCCGGCACCTTATGATCGCCGG
TGGCATCGATAGGTTGCCCAGCTGGATCATGTCGCTCACATACCTTGTTCAGTTCAACATGTCGTGGGGGAAAGTTGCTG
GTGACCAGCTATTCGATGTCCTGTGTGAGTTGCCCAGCCTCGAGACCATCTGCATTCACAATTATTGCTACGAGGGCAAT
GTTCTAGTTGCACGCACTAGACACAGGTTTCCGGAGCTCATCACTTTAAGAATAGCCTCTGGATCAAAGCTTCCCAATGT
TATTCGGTTTGAGAATGGAACCATGCCAAAGCTCGAGAACCTGCTAGTTAACTTCACTGACAATGATGAGAAGAAGATTA
TTGGCATCAGGCACCTGACCAGCCTCAAAGAGGTACAGCTCTGGGGTAACGAGAGCAACCTTGCACTACATCGTGCACTG
AAGCATCTCAAGAGTGAGAACAAGAGGCGCCTTTTTGAGTCCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis