Browse Element(s) Details


Os.27237.3.A1_x_at

Description gb:NM_197812.1
DB_XREF= gi:37536983
TID=Os.27237.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27237 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0057L21.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0057L21.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g390001/11expressed protein
LOC_Os10g418501/11F-box domain containing protein, expressed
LOC_Os02g157041/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38950Os.18307.1.S1_at11/117+23351259..23353084expressed protein
LOC_Os07g38960Os.37713.1.S1_at11/117+23356083..23357999Chlorophyll a-b binding protein 7, chloroplast precursor, putative, expressed
LOC_Os07g38970Os.38799.1.S1_at11/117+23359440..23364233Succinyl-CoA ligase alpha-chain 2, mitochondrial precursor, putative, expressed
LOC_Os07g38980OsAffx.16622.1.S1_at11/117+23365095..23369130hypothetical protein
LOC_Os07g38980OsAffx.18481.1.S1_x_at2/117+23365095..23369130hypothetical protein
LOC_Os07g38990Os.36711.1.S1_at11/117+23369857..23372191expressed protein
LOC_Os07g39000OsAffx.16622.1.S1_at2/117+23376944..23379350expressed protein
LOC_Os07g39000Os.27237.3.A1_x_at1/117+23376944..23379350expressed protein
LOC_Os07g39010Os.48332.1.A1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.11693.1.S1_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_x_at4/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.23259.1.S1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.2.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.9194.3.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39020Os.47325.1.S1_at11/117+23396515..23398959Subtilisin N-terminal Region family protein, expressed
LOC_Os07g39030OsAffx.5573.1.S1_at11/117+23399311..23400153hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27237.3.A1_x_at--550--4072Chr07:5388574..5388612 (25 bp)
CGAGTTCCCCATCGGTGGTGGCGGC
NONE
Os.27237.3.A1_x_at--469--6173Chr02:8850773..8850796 (24 bp)
GAGGATGGACTGGTCGAACCTTGGT
LOC_Os02g15704
Os.27237.3.A1_x_at--88--7571Chr10:22197489..22197513 (25 bp)
GGGCCGCCGGGTTGATCGCCGAGCG
NONE
Os.27237.3.A1_x_at--407--7913Chr07:23378277..23378344 (25 bp)
GGTTGATCGCCGAGCGCGTCCTCGC
LOC_Os07g39000
Os.27237.3.A1_x_at--270--8691Chr10:22197402..22197426 (25 bp)
TGTGCTCGGTGGATCCCCGCTGCTC
NONE
Os.27237.3.A1_x_at--688--4771Chr10:22197384..22197408 (25 bp)
GCTGCTCGCAGAGCGGCGCCATGGA
NONE
Os.27237.3.A1_x_at--861--4191Chr10:22197345..22197369 (25 bp)
CCCGGCGGTGGATGATGCTTGACAA
NONE
Os.27237.3.A1_x_at--623--6331Chr10:22197332..22197356 (25 bp)
GATGCTTGACAAGGCGGCGCCCCAA
NONE
Os.27237.3.A1_x_at--583--9071Chr10:22197298..22197322 (25 bp)
TGCTTCCGCTTCCATCACCAGAATA
NONE
Os.27237.3.A1_x_at--73--10671Chr10:22197295..22197319 (25 bp)
TTCCGCTTCCATCACCAGAATATGA
NONE
Os.27237.3.A1_x_at--961--9231Chr10:22197288..22197312 (25 bp)
TCCATCACCAGAATATGACACTCCT
NONE
Target Sequence 
CGAGTTCCCCATCGGTGGTGGCGGCGGAGCGTGCGGGGAAGGAGGAGGAGGAGGATGGACTGGTCGAACCTTGGTGGGGA
GGGGCCGCCGGGTTGATCGCCGAGCGCGTCCTCGCCAACGACGTCGCCGACTACATCCGCTTCCGCGCCGTGTGCCGGCC
GTGGCGGCTGTGCTCGGTGGATCCCCGCTGCTCGCAGAGCGGCGCCATGGACGGCCGCTTCCTCCCCCGGCGGTGGATGA
TGCTTGACAAGGCGGCGCCCCAAGCCGTCGGCTGCTTCCGCTTCCATCACCAGAATATGACACTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27237.3.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis