Browse Element(s) Details


Os.18307.1.S1_at

Description gb:AK100831.1
DB_XREF= gi:32986040
TID=Os.18307.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123D09, full insert sequence.
FL= gb:AK100831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3895011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38900Os.28814.2.S1_x_at1/117+23326517..23327484hypothetical protein
LOC_Os07g38910OsAffx.5571.1.S1_at11/117+23328327..23329152histidine kinase 1, putative, expressed
LOC_Os07g38930OsAffx.5572.1.S1_at10/117+23342395..23346718Glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g38940Os.57174.1.S1_at11/117+23347747..23350794Ubiquitin-conjugating enzyme E2 E3, putative, expressed
LOC_Os07g38940OsAffx.16621.1.S1_at10/117+23347747..23350794Ubiquitin-conjugating enzyme E2 E3, putative, expressed
LOC_Os07g38950Os.18307.1.S1_at11/117+23351259..23353084expressed protein
LOC_Os07g38960Os.37713.1.S1_at11/117+23356083..23357999Chlorophyll a-b binding protein 7, chloroplast precursor, putative, expressed
LOC_Os07g38970Os.38799.1.S1_at11/117+23359440..23364233Succinyl-CoA ligase alpha-chain 2, mitochondrial precursor, putative, expressed
LOC_Os07g38980OsAffx.16622.1.S1_at11/117+23365095..23369130hypothetical protein
LOC_Os07g38980OsAffx.18481.1.S1_x_at2/117+23365095..23369130hypothetical protein
LOC_Os07g38990Os.36711.1.S1_at11/117+23369857..23372191expressed protein
LOC_Os07g39000OsAffx.16622.1.S1_at2/117+23376944..23379350expressed protein
LOC_Os07g39000Os.27237.3.A1_x_at1/117+23376944..23379350expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18307.1.S1_at--281--2111Chr07:23352526..23352550 (25 bp)
ACATGCATGCATCAGAGTTCCCTAG
LOC_Os07g38950
Os.18307.1.S1_at--990--6051Chr07:23352540..23352564 (25 bp)
GAGTTCCCTAGTAGAATCAGCACAT
LOC_Os07g38950
Os.18307.1.S1_at--222--7951Chr07:23352652..23352676 (25 bp)
GGATAACCATCTACCTGAACGAATA
LOC_Os07g38950
Os.18307.1.S1_at--674--6931Chr07:23352691..23352715 (25 bp)
GTAGGGTATCATCCATTTGCTGTAT
LOC_Os07g38950
Os.18307.1.S1_at--560--2093Chr08:16950843..16950862 (20 bp)
ACATCAGAGTCTAGCTAGTTCACGC
NONE
Os.18307.1.S1_at--218--6131Chr07:23352848..23352872 (25 bp)
GAGGGAATTGCCCAGTTCTACCGAC
LOC_Os07g38950
Os.18307.1.S1_at--187--9531Chr07:23352864..23352888 (25 bp)
TCTACCGACACTCTCTGGTCAGAGA
LOC_Os07g38950
Os.18307.1.S1_at--622--1352Chr07:23352884..23352908 (25 bp)
AGAGATGGTGTTGGTGCACGCTCCC
LOC_Os07g38950
Os.18307.1.S1_at--363--431Chr07:23352914..23352938 (25 bp)
ATCTTTTTGAGAGTCACGTCCCCTT
LOC_Os07g38950
Os.18307.1.S1_at--60--4011Chr07:23352930..23352954 (25 bp)
CGTCCCCTTTTCAATTTGGTGTATG
LOC_Os07g38950
Os.18307.1.S1_at--714--7011Chr07:23353053..23353077 (25 bp)
GTACTTCATCACATATTTCTGCTCT
LOC_Os07g38950
Target Sequence 
ACATGCATGCATCAGAGTTCCCTAGTAGAATCAGCACATCTCAGTATAATAATGCACCTAATGCAAAAACATGGTTTTGG
AGGATAGTTTCAGATGTGCAGAATCTGCCAAGAAACTCTAGAGCAAGGATAACCATCTACCTGAACGAATAATCTTGATC
AACTAGTAGGGTATCATCCATTTGCTGTATTATCTGAGTTGTTTTATGGCATTTGCTCAGCAATGTAATTACTCAATGAT
GTACCAGATAAACATCAGAGTCTAGCTAGTTCACGCNCTTTGAATNCATCCTCTGCAAAGTTACTACACGAAGTATGAAC
ACGAGGGAATTGCCCAGTTCTACCGACACTCTCTGGTCAGAGATGGTGTTGGTGCACGCTCCCTTTCCATCTTTTTGAGA
GTCACGTCCCCTTTTCAATTTGGTGTATGCATGATGAATGTTGAGAGTGCACGTTAGTGAAAAAAAAATTGAGTTTGTGA
TGTTTGTGAGGTGCTCTTGATTGAGGATGCAACATGCCAACAAGTATGTACTTCATCACATATTTCTGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis