Browse Element(s) Details


OsAffx.16621.1.S1_at

Description tigr:9635.m03880
TID=OsAffx.16621.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ubiquitin-conjugating enzyme
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3894010/11Ubiquitin-conjugating enzyme E2 E3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38880NANA7+23322811..23323176hypothetical protein
LOC_Os07g38890Os.54822.1.S1_at11/117+23323505..23325533indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os07g38900Os.28814.2.S1_x_at1/117+23326517..23327484hypothetical protein
LOC_Os07g38910OsAffx.5571.1.S1_at11/117+23328327..23329152histidine kinase 1, putative, expressed
LOC_Os07g38930OsAffx.5572.1.S1_at10/117+23342395..23346718Glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g38940Os.57174.1.S1_at11/117+23347747..23350794Ubiquitin-conjugating enzyme E2 E3, putative, expressed
LOC_Os07g38940OsAffx.16621.1.S1_at10/117+23347747..23350794Ubiquitin-conjugating enzyme E2 E3, putative, expressed
LOC_Os07g38950Os.18307.1.S1_at11/117+23351259..23353084expressed protein
LOC_Os07g38960Os.37713.1.S1_at11/117+23356083..23357999Chlorophyll a-b binding protein 7, chloroplast precursor, putative, expressed
LOC_Os07g38970Os.38799.1.S1_at11/117+23359440..23364233Succinyl-CoA ligase alpha-chain 2, mitochondrial precursor, putative, expressed
LOC_Os07g38980OsAffx.16622.1.S1_at11/117+23365095..23369130hypothetical protein
LOC_Os07g38980OsAffx.18481.1.S1_x_at2/117+23365095..23369130hypothetical protein
LOC_Os07g38990Os.36711.1.S1_at11/117+23369857..23372191expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009640biological_processphotomorphogenesis
GO:0005634cellular_componentnucleus
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16621.1.S1_at--830--5971Chr07:23349370..23349394 (25 bp)
GAGAAAGGTTTTGTCCATTGGAAGC
LOC_Os07g38940
OsAffx.16621.1.S1_at--566--10791Chr07:23349380..23349404 (25 bp)
TTGTCCATTGGAAGCCTAATGTGCT
LOC_Os07g38940
OsAffx.16621.1.S1_at--793--1671Chr07:23349392..23349416 (25 bp)
AGCCTAATGTGCTTGGGCATCACCT
LOC_Os07g38940
OsAffx.16621.1.S1_at--1101--771Chr07:23349398..23349422 (25 bp)
ATGTGCTTGGGCATCACCTTCATCC
LOC_Os07g38940
OsAffx.16621.1.S1_at--817--391Chr07:23349410..23349434 (25 bp)
ATCACCTTCATCCTATGTCAATATA
LOC_Os07g38940
OsAffx.16621.1.S1_at--510--571Chr07:23349419..23349443 (25 bp)
ATCCTATGTCAATATACTATTTGCA
LOC_Os07g38940
OsAffx.16621.1.S1_at--920--2031Chr07:23349434..23349542 (25 bp)
ACTATTTGCATAGTAGTCTGCCTAC
LOC_Os07g38940
OsAffx.16621.1.S1_at--464--291Chr07:23349443..23349551 (25 bp)
ATAGTAGTCTGCCTACACAGCCCTA
LOC_Os07g38940
OsAffx.16621.1.S1_at--832--7171Chr07:23349537..23349557 (21 bp)
GTCTGCCTACACAGCCCTACATGAT
LOC_Os07g38940
OsAffx.16621.1.S1_at--102--1671Chr07:23349545..23349569 (25 bp)
AGCCCTACATGATCACCTGCTTCAT
LOC_Os07g38940
OsAffx.16621.1.S1_at--368--9671NONE
TCACCTGCTTCATGGTAACTTTCAA
NONE
Target Sequence 
GAGAAAGGTTTTGTCCATTGGAAGCCTAATGTGCTTGGGCATCACCTTCATCCTATGTCAATATACTATTTGCATAGTAG
TCTGCCTACACAGCCCTACATGATCACCTGCTTCATGGTAACTTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis