Browse Element(s) Details


Os.54822.1.S1_at

Description gb:AK106839.1
DB_XREF= gi:32992048
TID=Os.54822.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-H03, full insert sequence.
FL= gb:AK106839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3889011/11indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38840Os.16563.1.S1_at11/117+23297351..23300519pre-mRNA processing protein PRP39, putative, expressed
LOC_Os07g38850Os.8566.1.S1_at11/117+23300758..23308009UbiA prenyltransferase family protein, putative, expressed
LOC_Os07g38860NANA7+23312788..23317460indole-3-acetic acid-amido synthetase GH3.1, putative
LOC_Os07g38870OsAffx.16619.1.S1_at11/117+23320550..23321350hypothetical protein
LOC_Os07g38880NANA7+23322811..23323176hypothetical protein
LOC_Os07g38890Os.54822.1.S1_at11/117+23323505..23325533indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os07g38900Os.28814.2.S1_x_at1/117+23326517..23327484hypothetical protein
LOC_Os07g38910OsAffx.5571.1.S1_at11/117+23328327..23329152histidine kinase 1, putative, expressed
LOC_Os07g38930OsAffx.5572.1.S1_at10/117+23342395..23346718Glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g38940Os.57174.1.S1_at11/117+23347747..23350794Ubiquitin-conjugating enzyme E2 E3, putative, expressed
LOC_Os07g38940OsAffx.16621.1.S1_at10/117+23347747..23350794Ubiquitin-conjugating enzyme E2 E3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0010252biological_processauxin homeostasis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54822.1.S1_at--519--2671Chr07:23324051..23324075 (25 bp)
AAGCGTGCTGCTATCCGTCGAGTTA
LOC_Os07g38890
Os.54822.1.S1_at--969--2591Chr07:23323917..23323941 (25 bp)
AACGCATCCCGGGACATTATGTGGT
LOC_Os07g38890
Os.54822.1.S1_at--927--9911Chr07:23323891..23323915 (25 bp)
TACTGGGAGCTACTGACCGAGTCAC
LOC_Os07g38890
Os.54822.1.S1_at--247--9431Chr07:23323749..23323773 (25 bp)
TCGGGCCACTCGAGATCCGGATCGT
LOC_Os07g38890
Os.54822.1.S1_at--180--991Chr07:23323707..23323731 (25 bp)
AGGAGGTCATGGACTTGGCCGTCTC
LOC_Os07g38890
Os.54822.1.S1_at--813--4691Chr07:23323680..23323704 (25 bp)
GCGGCACGTCCATTGGGCAGTACAA
LOC_Os07g38890
Os.54822.1.S1_at--371--9851Chr07:23323660..23323684 (25 bp)
TACAAGGTGCCCCAGTGCGTGACTG
LOC_Os07g38890
Os.54822.1.S1_at--783--7371Chr07:23323642..23323666 (25 bp)
GTGACTGTCCCATCCGTGGTGGAGC
LOC_Os07g38890
Os.54822.1.S1_at--697--7191Chr07:23323603..23323627 (25 bp)
GTCGTGTCTAGCCAATTCAGCCCTG
LOC_Os07g38890
Os.54822.1.S1_at--1019--6372Chr07:23317476..23317500 (25 bp)
GATCCGACTAGCAATGCATCCTGTT
NONE
Os.54822.1.S1_at--881--3531Chr07:23323535..23323559 (25 bp)
CATCCTGTTTGGCATCTTTATTTTA
LOC_Os07g38890
Target Sequence 
AAGCGTGCTGCTATCCGTCGAGTTAGACAAGACCGACGAGGCCGAGCTGCACCGCGCGGTGGAGCGCGCCTCCTCGGCGC
TCCTCCGCCCGCGCGGCGTGTCCGTCGCGGAGTACACCAGCCGCGCGTGCACCGAACGCATCCCGGGACATTATGTGGTC
TACTGGGAGCTACTGACCGAGTCACCCGTCGGCGCCGGCGACGGTGACACGGTGGACGGGGAGACGCTCGGCAGGTGCTG
CCTCGAGATGGAGGAGGCACTCAGCGCGGTGTACAGGCAGGGCAGGGTTGCGGACGGCTCGATCGGGCCACTCGAGATCC
GGATCGTCCGTCCCGGCACGTTCGAGGAGGTCATGGACTTGGCCGTCTCCCGCGGCACGTCCATTGGGCAGTACAAGGTG
CCCCAGTGCGTGACTGTCCCATCCGTGGTGGAGCTGCTGGACTCGCGCGTCGTGTCTAGCCAATTCAGCCCTGCCCTGCC
GCATTGGATCCCGACTCCACGATCCGACTAGCAATGCATCCTGTTTGGCATCTTTATTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis