Browse Element(s) Details


Os.28814.2.S1_x_at

Description gb:NM_192152.1
DB_XREF= gi:34911387
GEN=P0034C09.25
TID=Os.28814.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.28814 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) myosin heavy chain-like protein (P0034C09.25), mRNA.
PROD=myosin heavy chain-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4974011/11expressed protein
LOC_Os07g389001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49680Os.32672.1.S1_x_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.2.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.3.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49690Os.18690.1.S1_at11/111+28882793..28887542Serine/threonine protein phosphatase 6, putative, expressed
LOC_Os01g49700OsAffx.2285.1.S1_at11/111+28888541..28888850hypothetical protein
LOC_Os01g49710Os.38022.2.S1_x_at11/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49710Os.38022.1.S1_at3/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49720OsAffx.11535.1.S1_at11/111+28895823..28896613glutathione S-transferase GSTU6, putative, expressed
LOC_Os01g49730Os.57153.1.S1_at11/111+28898884..28899768expressed protein
LOC_Os01g49740Os.28814.1.S1_at11/111+28899980..28902522expressed protein
LOC_Os01g49740Os.28814.2.S1_x_at11/111+28899980..28902522expressed protein
LOC_Os01g49750Os.29043.1.S1_at11/111+28902662..28903521expressed protein
LOC_Os01g49760Os.33553.2.S1_x_at11/111+28904947..28910543expressed protein
LOC_Os01g49760Os.33553.1.S1_at11/111+28904947..28910543expressed protein
LOC_Os01g49770Os.7556.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.45918.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.7556.1.S1_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49780NANA1+28916796..28917296hypothetical protein
LOC_Os01g49790NANA1+28921794..28922069hypothetical protein
LOC_Os01g49800OsAffx.11536.1.S1_at11/111+28923828..28924902hypothetical protein
LOC_Os01g49810OsAffx.23731.1.S1_at11/111+28926142..28927092hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28814.2.S1_x_at--866--4051Chr01:28901591..28901615 (25 bp)
CGATGAGGAAGCTCAGGGACACCGT
LOC_Os01g49740
Os.28814.2.S1_x_at--230--9651Chr01:28901603..28901627 (25 bp)
TCAGGGACACCGTGGAGAGCACGAT
LOC_Os01g49740
Os.28814.2.S1_x_at--637--1771Chr01:28901611..28901635 (25 bp)
ACCGTGGAGAGCACGATGCAGGCCA
LOC_Os01g49740
Os.28814.2.S1_x_at--23--4051Chr01:28901666..28901690 (25 bp)
CGATGACCATCTCCCGGTTCGAGTA
LOC_Os01g49740
Os.28814.2.S1_x_at--205--10632Chr07:23327119..23327240 (25 bp)
TTCGAGTACGAGTACCTGACCGGGC
LOC_Os07g38900
Os.28814.2.S1_x_at--87--1631Chr01:28901897..28901921 (25 bp)
AGCTGGAGCAGGAGCTGTACGACCT
LOC_Os01g49740
Os.28814.2.S1_x_at--336--1591Chr01:28901909..28901933 (25 bp)
AGCTGTACGACCTGAACGCGGCGGC
LOC_Os01g49740
Os.28814.2.S1_x_at--922--1311Chr01:28901936..28901960 (25 bp)
AGAGGGACGGCCTGCAGTGCGCGTA
LOC_Os01g49740
Os.28814.2.S1_x_at--181--9371Chr01:28901995..28902019 (25 bp)
TCGAGGAGGTCCAAGCCCCGGCGGT
LOC_Os01g49740
Os.28814.2.S1_x_at--874--4491Chr01:28902054..28902078 (25 bp)
GCCGTCGTTCACCATCAAGAGGAAG
LOC_Os01g49740
Os.28814.2.S1_x_at--536--8851Chr01:28902086..28902110 (25 bp)
TGATGCCCAACCTCCTGAAGCTGAT
LOC_Os01g49740
Target Sequence 
CGATGAGGAAGCTCAGGGACACCGTGGAGAGCACGATGCAGGCCAGGGCGTCGTCGGCGGCACGGCGGCAGGGGACGATG
ACCATCTCCCGGTTCGAGTACGAGTACCTGACCGGGCGCGCGGCGCTGGTCCGGGTGGTGACCGACAAGAAGGTGGCCGC
GGCGCAGGCGTGGGTGCAGGCGCTGAAGGCCAGCGAGAAGGAGGCCGCGGCGCGCGCCGAGGCGGCGGAGCGGGAGGTGA
GGGAGATGGAGGCCAGGGCGGCGCAGGTGGCGGCGGAGGCGGAGAAGACGGCGGCGGAGCAGAAGGAGCTGGAGCAGGAG
CTGTACGACCTGAACGCGGCGGCGGAGAGGGACGGCCTGCAGTGCGCGTACCCGCGGCGGCGGTCGAGCAGGGTGTCGGC
GACGTCGAGGAGGTCCAAGCCCCGGCGGTCGTCGGTGTCCGCGGGCGCATGGAACCCGCGCTCGCCGTCGTTCACCATCA
AGAGGAAGAGGAAGGTGATGCCCAACCTCCTGAAGCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28814.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis