Browse Element(s) Details


Os.38022.1.S1_at

Description gb:AK064650.1
DB_XREF= gi:32974668
TID=Os.38022.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glutathione S-transferase GST 22 (P0034C09.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-D12, full insert sequence.
FL= gb:AK064650.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g497103/11Glutathione S-transferase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49670Os.7027.1.S1_a_at11/111+28868405..28872257Cytidylyltransferase family protein, expressed
LOC_Os01g49670Os.7027.1.S1_s_at11/111+28868405..28872257Cytidylyltransferase family protein, expressed
LOC_Os01g49680Os.32672.1.S1_x_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.2.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.3.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49690Os.18690.1.S1_at11/111+28882793..28887542Serine/threonine protein phosphatase 6, putative, expressed
LOC_Os01g49700OsAffx.2285.1.S1_at11/111+28888541..28888850hypothetical protein
LOC_Os01g49710Os.38022.2.S1_x_at11/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49710Os.38022.1.S1_at3/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49720OsAffx.11535.1.S1_at11/111+28895823..28896613glutathione S-transferase GSTU6, putative, expressed
LOC_Os01g49730Os.57153.1.S1_at11/111+28898884..28899768expressed protein
LOC_Os01g49740Os.28814.1.S1_at11/111+28899980..28902522expressed protein
LOC_Os01g49740Os.28814.2.S1_x_at11/111+28899980..28902522expressed protein
LOC_Os01g49750Os.29043.1.S1_at11/111+28902662..28903521expressed protein
LOC_Os01g49760Os.33553.2.S1_x_at11/111+28904947..28910543expressed protein
LOC_Os01g49760Os.33553.1.S1_at11/111+28904947..28910543expressed protein
LOC_Os01g49770Os.7556.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.45918.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.7556.1.S1_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49780NANA1+28916796..28917296hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38022.1.S1_at--1036--5151Chr01:28894061..28894085 (25 bp)
GCAACGTTCATGTCGGTGATTGAGA
LOC_Os01g49710
Os.38022.1.S1_at--1112--6032Chr08:26418191..26418247 (24 bp)
GAGATCGACATTTTTGTTTTGATAC
NONE
Os.38022.1.S1_at--1029--311Chr01:28894002..28894026 (25 bp)
ATACTGTATTAAGTTCTTCCCGCCG
LOC_Os01g49710
Os.38022.1.S1_at--86--4731Chr01:28893626..28893650 (25 bp)
GCTGGTTCTACCTAATGGCAATCTA
NONE
Os.38022.1.S1_at--1155--3731Chr01:28893615..28893639 (25 bp)
CTAATGGCAATCTATCTGCCTTGCT
NONE
Os.38022.1.S1_at--1126--9091Chr01:28893594..28893618 (25 bp)
TGCTCGCCTGCTTTGACGATGAAGA
NONE
Os.38022.1.S1_at--128--6651Chr01:28893568..28893592 (25 bp)
GTTGTTTGGTACTGTGTCATGTGAA
NONE
Os.38022.1.S1_at--765--5511Chr01:28893546..28893570 (25 bp)
GAAAATATTTTGTTAGTCTCTGTTG
NONE
Os.38022.1.S1_at--398--6791Chr01:28893535..28893559 (25 bp)
GTTAGTCTCTGTTGAGCGGTGTTCA
NONE
Os.38022.1.S1_at--703--6651Chr01:28893525..28893549 (25 bp)
GTTGAGCGGTGTTCAGAATGCAAAT
NONE
Os.38022.1.S1_at--581--5272Chr02:24375853..24376036 (25 bp)
GAATGCAAATGTGTACATCTTGAAT
NONE
Target Sequence 
GCAACGTTCATGTCGGTGATTGAGAAATCAATATTAGAGAGATCGACATTTTTGTTTTGATACTGTATTAAGTTCTTCCC
GCCGTGGAGGGCGCTGATGAGGGCGACGACGGCGGAGCAGAGAGCGGAGGCCTTCATGAACGCCGTACCTCAGGTGGAGG
TGCTGGAGCGAGCGTTCGTGGAGTGCTCCAAGGGGAAGGCGTTCTTCGGCGGCGACGCCGTCGGGCTCGTCGACGTCGTG
GTCGGCGGCTTCGTGGTGTGGTTCAAGGTGGTGGACGAGGTGGCCGGCTCCAGCCTCCTCGACGAGGCCAAGTTCCCGGG
CCTGGCGGCGTGGGCGGAGCGGTTCTTGGCGGTGGACGCCGTCCGGGAGGCGATGCCCGACGCCGGGAAGCTCCTGGAGC
ACTACAAGGGATTTCTGGCTAAATTGGCTTCGCCAGCTGGTTCTACCTAATGGCAATCTATCTGCCTTGCTCGCCTGCTT
TGACGATGAAGAAGTTGTTTGGTACTGTGTCATGTGAAAATATTTTGTTAGTCTCTGTTGAGCGGTGTTCAGAATGCAAA
TGTGTACATCTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis