Browse Element(s) Details


Os.45918.1.S1_x_at

Description gb:NM_192156.1
DB_XREF= gi:34911395
GEN=P0034C09.29
TID=Os.45918.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45918 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) RING zinc finger protein-like (P0034C09.29), mRNA.
PROD=RING zinc finger protein-like
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4977011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49690Os.18690.1.S1_at11/111+28882793..28887542Serine/threonine protein phosphatase 6, putative, expressed
LOC_Os01g49700OsAffx.2285.1.S1_at11/111+28888541..28888850hypothetical protein
LOC_Os01g49710Os.38022.2.S1_x_at11/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49710Os.38022.1.S1_at3/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49720OsAffx.11535.1.S1_at11/111+28895823..28896613glutathione S-transferase GSTU6, putative, expressed
LOC_Os01g49730Os.57153.1.S1_at11/111+28898884..28899768expressed protein
LOC_Os01g49740Os.28814.1.S1_at11/111+28899980..28902522expressed protein
LOC_Os01g49740Os.28814.2.S1_x_at11/111+28899980..28902522expressed protein
LOC_Os01g49750Os.29043.1.S1_at11/111+28902662..28903521expressed protein
LOC_Os01g49760Os.33553.2.S1_x_at11/111+28904947..28910543expressed protein
LOC_Os01g49760Os.33553.1.S1_at11/111+28904947..28910543expressed protein
LOC_Os01g49770Os.7556.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.45918.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.7556.1.S1_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49780NANA1+28916796..28917296hypothetical protein
LOC_Os01g49790NANA1+28921794..28922069hypothetical protein
LOC_Os01g49800OsAffx.11536.1.S1_at11/111+28923828..28924902hypothetical protein
LOC_Os01g49810OsAffx.23731.1.S1_at11/111+28926142..28927092hypothetical protein
LOC_Os01g49820Os.41653.1.S1_x_at11/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.41653.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.20321.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45918.1.S1_x_at--322--1351Chr01:28912610..28912630 (21 bp)
AGAGAGAGACCGTGCCTGTCCAGGA
LOC_Os01g49770
Os.45918.1.S1_x_at--451--7331Chr01:28912577..28912601 (25 bp)
GTGCAGGAGCAGATATCGTCGTCGT
LOC_Os01g49770
Os.45918.1.S1_x_at--884--6491Chr01:28912566..28912590 (25 bp)
GATATCGTCGTCGTTCATGGACTCG
LOC_Os01g49770
Os.45918.1.S1_x_at--297--4251Chr01:28912452..28912471 (20 bp)
CCGTCGGCCTCGAGGAAGAGATCAT
LOC_Os01g49770
Os.45918.1.S1_x_at--682--5271Chr01:28910663..28910687 (25 bp)
GAATGAGCATGTATGATCGGTACCA
LOC_Os01g49770
Os.45918.1.S1_x_at--887--491Chr01:28910648..28910672 (25 bp)
ATCGGTACCAGGATTGGCGCCTTGA
LOC_Os01g49770
Os.45918.1.S1_x_at--1105--7911Chr01:28910638..28910662 (25 bp)
GGATTGGCGCCTTGATGTTGATAAC
LOC_Os01g49770
Os.45918.1.S1_x_at--1119--5971Chr01:28910470..28910494 (25 bp)
GAGATAGTTCGCAACCTTAGGAAGG
LOC_Os01g49770
Os.45918.1.S1_x_at--804--8571Chr01:28910231..28910255 (25 bp)
TGGATTGCGGCCACAGCTACCATGT
LOC_Os01g49770
Os.45918.1.S1_x_at--333--6831Chr01:28910208..28910232 (25 bp)
GTTTACTGCATTAAGCAATGGCTTT
LOC_Os01g49770
Os.45918.1.S1_x_at--64--4871Chr01:28910188..28910212 (25 bp)
GCTTTCTCAGAAGAACGTTTGCCCA
LOC_Os01g49770
Target Sequence 
AGAGAGAGACCGTGCCTGTCCAGGAGGGTGACCGTGCAGGAGCAGATATCGTCGTCGTTCATGGACTCGCCGCCGCCGCC
GCACCTCGACGTCGCGCCCTTCTTCGGCGCCGACCTCCTCCCCTCCGGCCGCCTCCGCCGGATGCGCGGGTACCGCCACT
CCCCCGTCGGCCTCGAGGAAGAGATCATGATGTTTCAGACAAGAGTTCTGTTGGGAGGAATGAGCATGTATGATCGGTAC
CAGGATTGGCGCCTTGATGTTGATAACATGACATACGAGGAGTTGCTTGAGCTTGGAGATAAAATAGGTTATGTCAACAC
TGGATTGCGTGAGGATGAGATAGTTCGCAACCTTAGGAAGGAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATT
GCGGCCACAGCTACCATGTTTACTGCATTAAGCAATGGCTTTCTCAGAAGAACGTTTGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45918.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis