Browse Element(s) Details


Os.33553.2.S1_x_at

Description gb:NM_192155.1
DB_XREF= gi:34911393
GEN=P0034C09.28
TID=Os.33553.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33553 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) similar to Arabidopsis thaliana chromosome 1, At1g15060 (P0034C09.28), mRNA.
PROD=similar to Arabidopsis thaliana chromosome 1,At1g15060
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4976011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49680Os.32672.1.S1_x_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.2.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.3.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49690Os.18690.1.S1_at11/111+28882793..28887542Serine/threonine protein phosphatase 6, putative, expressed
LOC_Os01g49700OsAffx.2285.1.S1_at11/111+28888541..28888850hypothetical protein
LOC_Os01g49710Os.38022.2.S1_x_at11/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49710Os.38022.1.S1_at3/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49720OsAffx.11535.1.S1_at11/111+28895823..28896613glutathione S-transferase GSTU6, putative, expressed
LOC_Os01g49730Os.57153.1.S1_at11/111+28898884..28899768expressed protein
LOC_Os01g49740Os.28814.1.S1_at11/111+28899980..28902522expressed protein
LOC_Os01g49740Os.28814.2.S1_x_at11/111+28899980..28902522expressed protein
LOC_Os01g49750Os.29043.1.S1_at11/111+28902662..28903521expressed protein
LOC_Os01g49760Os.33553.2.S1_x_at11/111+28904947..28910543expressed protein
LOC_Os01g49760Os.33553.1.S1_at11/111+28904947..28910543expressed protein
LOC_Os01g49770Os.7556.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.45918.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.7556.1.S1_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49780NANA1+28916796..28917296hypothetical protein
LOC_Os01g49790NANA1+28921794..28922069hypothetical protein
LOC_Os01g49800OsAffx.11536.1.S1_at11/111+28923828..28924902hypothetical protein
LOC_Os01g49810OsAffx.23731.1.S1_at11/111+28926142..28927092hypothetical protein
LOC_Os01g49820Os.41653.1.S1_x_at11/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.41653.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.20321.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33553.2.S1_x_at--444--2391Chr01:28907440..28907464 (25 bp)
AAACTGCTTGCCATTGGTCATTCAA
LOC_Os01g49760
Os.33553.2.S1_x_at--536--8171Chr01:28907904..28907928 (25 bp)
GGAACATTACTGTCTACCACTTACC
LOC_Os01g49760
Os.33553.2.S1_x_at--1067--9411Chr01:28907939..28907963 (25 bp)
TCGTGCACCCTATATTCTGTCATTG
LOC_Os01g49760
Os.33553.2.S1_x_at--478--9111Chr01:28907962..28907986 (25 bp)
TGCTGCGCTCTCAAATTTCATCAAA
LOC_Os01g49760
Os.33553.2.S1_x_at--255--831Chr01:28907994..28908018 (25 bp)
ATGGATCCTGATCTGCTTTCGAAGC
LOC_Os01g49760
Os.33553.2.S1_x_at--332--9011Chr01:28908025..28908445 (25 bp)
TGAATAACTTCTGCACGGTGCCAGC
LOC_Os01g49760
Os.33553.2.S1_x_at--721--91Chr01:28908473..28908497 (25 bp)
ATTCCGTGATGGTGGGCTGCGCAAC
LOC_Os01g49760
Os.33553.2.S1_x_at--445--7851Chr01:28908504..28908528 (25 bp)
GGTACCTTTTTCTTCAAGCAGCATC
LOC_Os01g49760
Os.33553.2.S1_x_at--67--3191Chr01:28908547..28908571 (25 bp)
CAATACTTGCCCTTGCTGGAGATGA
LOC_Os01g49760
Os.33553.2.S1_x_at--581--4111Chr01:28909179..28909203 (25 bp)
CGAAGGCCCTCATTATGCGCATTAT
LOC_Os01g49760
Os.33553.2.S1_x_at--84--8511Chr01:28909623..28909647 (25 bp)
TGGCACTGATCATCGCCTGCAGAAA
LOC_Os01g49760
Target Sequence 
AAACTGCTTGCCATTGGTCATTCAATGGGGGGAATATTATTATATGCAATGGTTTCAAAGTGTGGAACATTACTGTCTAC
CACTTACCCTATATCGTCTCGTGCACCCTATATTCTGTCATTGCTGCGCTCTCAAATTTCATCAAAGGACATGATGGATC
CTGATCTGCTTTCGAAGCTTGTCTTGAATAACTTCTGCACGGTGCCAGCAAAGGTTTTACTACAGCTGACAACTGCATTC
CGTGATGGTGGGCTGCGCAACAGGGCTGGTACCTTTTTCTTCAAGCAGCATCTGCACAAAATCAAAGTGCCAATACTTGC
CCTTGCTGGAGATGAGGATCTGATTTGCCCCCCGGAAGCTGTTTATGAAACGGTGAAGTTAATTCCTCAGCATTTGGTGA
CATATAAGGTTTTTGGAAAGCCCGAAGGCCCTCATTATGCGCATTATGACTTGGTTGGAGGGCGAAAGAGACAAGAGGCT
TACACGGGCACGGTGGCACTGATCATCGCCTGCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33553.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis