Browse Element(s) Details

Os.32672.3.S1_at

Description

gb:NM_192145.1
DB_XREF= gi:34911373
GEN=P0034C09.18
TID=Os.32672.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32672 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) DNA excision repair protein ERCC3-like (P0034C09.18), mRNA.
PROD=DNA excision repair protein ERCC3-like
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g49680	10/11	DNA repair helicase ercc3, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g49614	Os.11986.1.S1_at	11/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	OsAffx.11534.1.S1_x_at	11/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.11986.3.S1_x_at	11/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.11986.3.S1_at	11/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.41662.1.S1_x_at	9/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	OsAffx.32334.1.S1_s_at	7/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	OsAffx.32334.1.S1_x_at	6/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	OsAffx.32238.1.A1_at	5/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.11986.2.S1_x_at	4/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.41662.1.S1_at	3/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.27097.1.A1_at	2/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.27097.1.A1_x_at	1/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.19294.1.S1_at	1/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49630	Os.28525.1.S1_at	11/11	1	+	28861668..28863344	expressed protein
LOC_Os01g49640	Os.18388.1.S1_at	11/11	1	+	28864720..28865464	Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os01g49650	Os.18388.3.S1_at	11/11	1	+	28865645..28866205	Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g49660	OsAffx.23728.1.S1_at	11/11	1	+	28866841..28868101	Reticulon family protein
LOC_Os01g49670	Os.7027.1.S1_a_at	11/11	1	+	28868405..28872257	Cytidylyltransferase family protein, expressed
LOC_Os01g49670	Os.7027.1.S1_s_at	11/11	1	+	28868405..28872257	Cytidylyltransferase family protein, expressed
LOC_Os01g49680	Os.32672.1.S1_x_at	10/11	1	+	28875541..28880596	DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680	Os.32672.2.S1_at	10/11	1	+	28875541..28880596	DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680	Os.32672.3.S1_at	10/11	1	+	28875541..28880596	DNA repair helicase ercc3, putative, expressed
LOC_Os01g49690	Os.18690.1.S1_at	11/11	1	+	28882793..28887542	Serine/threonine protein phosphatase 6, putative, expressed
LOC_Os01g49700	OsAffx.2285.1.S1_at	11/11	1	+	28888541..28888850	hypothetical protein
LOC_Os01g49710	Os.38022.2.S1_x_at	11/11	1	+	28893636..28894510	Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49710	Os.38022.1.S1_at	3/11	1	+	28893636..28894510	Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49720	OsAffx.11535.1.S1_at	11/11	1	+	28895823..28896613	glutathione S-transferase GSTU6, putative, expressed
LOC_Os01g49730	Os.57153.1.S1_at	11/11	1	+	28898884..28899768	expressed protein
LOC_Os01g49740	Os.28814.1.S1_at	11/11	1	+	28899980..28902522	expressed protein
LOC_Os01g49740	Os.28814.2.S1_x_at	11/11	1	+	28899980..28902522	expressed protein
LOC_Os01g49750	Os.29043.1.S1_at	11/11	1	+	28902662..28903521	expressed protein
LOC_Os01g49760	Os.33553.2.S1_x_at	11/11	1	+	28904947..28910543	expressed protein
LOC_Os01g49760	Os.33553.1.S1_at	11/11	1	+	28904947..28910543	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0009411	biological_process	response to UV
GO:0009636	biological_process	response to toxin
GO:0010224	biological_process	response to UV-B
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm
GO:0008026	molecular_function	ATP-dependent helicase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.32672.3.S1_at--186--273	1	NONE	AAGAAGAAGCAGGTGGGTGATAACT	NONE
Os.32672.3.S1_at--905--279	1	Chr01:28879329..28879352 (24 bp)	AAGATGATGGAAGCATTAGATCTCA	LOC_Os01g49680
Os.32672.3.S1_at--624--359	1	Chr01:28879341..28879365 (25 bp)	CATTAGATCTCAAACTGCTGCAGTC	LOC_Os01g49680
Os.32672.3.S1_at--290--199	1	Chr01:28879354..28879378 (25 bp)	ACTGCTGCAGTCATGTTCTAAGATA	LOC_Os01g49680
Os.32672.3.S1_at--374--897	1	Chr01:28879390..28879414 (25 bp)	TGAAATGTCATTGGATCTTGATAAT	LOC_Os01g49680
Os.32672.3.S1_at--204--797	1	Chr01:28879402..28879426 (25 bp)	GGATCTTGATAATTACTGTGACATC	LOC_Os01g49680
Os.32672.3.S1_at--1060--735	1	Chr01:28879419..28879646 (25 bp)	GTGACATCAGGGAGATGTACTACTC	LOC_Os01g49680
Os.32672.3.S1_at--912--987	1	Chr01:28880078..28880102 (25 bp)	TACATGGAGTACAGGTGCTTCTTCT	LOC_Os01g49680
Os.32672.3.S1_at--146--105	1	Chr01:28880090..28880114 (25 bp)	AGGTGCTTCTTCTTTCCGCTTATAT	LOC_Os01g49680
Os.32672.3.S1_at--98--957	1	Chr01:28880097..28880121 (25 bp)	TCTTCTTTCCGCTTATATTTCGTTT	LOC_Os01g49680
Os.32672.3.S1_at--87--1061	1	Chr01:28880115..28880139 (25 bp)	TTCGTTTTTACGTCAATTATTTGAT	LOC_Os01g49680

Target Sequence

AAGAAGAAGCAGGTGGGTGATAACTCGATTGATATTCCAGAAGCAAATGTGATCATACAAATTTCATCTCATGCTGGTTC
ACGGCGTCAAGAAGCTCAACGGTTGGGACGTATTCTCAGGGCAAAGATGATGGAAGCATTAGATCTCAAACTGCTGCAGT
CATGTTCTAAGATAATACTTTCTATTGAAATGTCATTGGATCTTGATAATTACTGTGACATCAGGGAGATGTACTACTCA
ACTAAAAGGCAACAATTTCTTATTGACCAGGGATATAGCTTCAAGGTGATCACCAGCTTGCCGCCACCTGAAGAATTACC
TAACCTGAAATATTACACACTTAATGATCAGCTTGAACTTTTGGCACAATTGCTGAGTGCAAGGGATGACATGATTGGCA
TTGAGCACTTGGAAGAGGATTCTGATGGCAAGGCTCTTATGAAAGCACGGCGATCTGCTGGATCAATGAGTGCCTTTTCT
GGATCGGGGGGAATGGTCTACATGGAGTACAGGTGCTTCTTCTTTCCGCTTATATTTCGTTTTTACGTCAATTATTTGAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis