Browse Element(s) Details


OsAffx.32334.1.S1_s_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=infA
TID=OsAffx.32334.1
CNT=1
FEA=DNA_62
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=initiation factor 1 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=initiation factor 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3396011/11translation initiation factor IF-1 family protein
LOC_Os01g5794411/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g496147/11Protein kinase domain containing protein, expressed
LOC_Os06g287507/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33920Os.47999.3.A1_at5/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.47999.3.A1_x_at3/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.47999.2.A1_x_at2/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.45173.1.S1_x_at1/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920OsAffx.20733.1.A1_x_at1/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33930OsAffx.19953.7.S1_s_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.32275.1.S1_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.32273.1.S1_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.19953.6.S1_s_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33939OsAffx.32277.1.S1_x_at5/1112+20430372..20430725hypothetical protein
LOC_Os12g33950OsAffx.32008.1.S1_at11/1112+20440473..20442136Myb-related protein, putative
LOC_Os12g33960OsAffx.32009.2.S1_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_s_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_x_at7/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32336.1.A1_at5/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32335.1.A1_at1/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g34080OsAffx.32277.1.S1_x_at11/1112+20448493..20450249expressed protein
LOC_Os12g34080OsAffx.1869.1.S1_at11/1112+20448493..20450249expressed protein
LOC_Os12g33980NANA12+20463491..20464756retrotransposon protein, putative, unclassified
LOC_Os12g33990OsAffx.32010.2.S1_s_at11/1112+20468512..20470653hypothetical protein
LOC_Os12g33990OsAffx.32010.4.S1_at11/1112+20468512..20470653hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0003723molecular_functionRNA binding
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32334.1.S1_s_at--899--59513Chr12:20445173..20445197 (25 bp)
GAGAATGACACCATCATCCTGGGCT
LOC_Os12g33960
OsAffx.32334.1.S1_s_at--328--4112Chr12:20445185..20445209 (25 bp)
ATCATCCTGGGCTATATTTCAGGAA
LOC_Os12g33960
OsAffx.32334.1.S1_s_at--62--35312Chr12:20445187..20445211 (25 bp)
CATCCTGGGCTATATTTCAGGAAAG
LOC_Os12g33960
OsAffx.32334.1.S1_s_at--552--38912Chr12:20445191..20445215 (25 bp)
CTGGGCTATATTTCAGGAAAGATCC
LOC_Os12g33960
OsAffx.32334.1.S1_s_at--675--48713Chr12:20445195..20445219 (25 bp)
GCTATATTTCAGGAAAGATCCGGTC
LOC_Os12g33960
OsAffx.32334.1.S1_s_at--148--101913Chr12:20445197..20445221 (25 bp)
TATATTTCAGGAAAGATCCGGTCTA
LOC_Os12g33960
OsAffx.32334.1.S1_s_at--5--101713Chr12:20445199..20445223 (25 bp)
TATTTCAGGAAAGATCCGGTCTAGT
LOC_Os12g33960
OsAffx.32334.1.S1_s_at--611--103112Chr12:20445201..20445225 (25 bp)
TTTCAGGAAAGATCCGGTCTAGTTC
LOC_Os12g33960
OsAffx.32334.1.S1_s_at--1042--105113Chr12:20445202..20445226 (25 bp)
TTCAGGAAAGATCCGGTCTAGTTCT
LOC_Os12g33960
OsAffx.32334.1.S1_s_at--250--9513Chr12:20445205..20445229 (25 bp)
AGGAAAGATCCGGTCTAGTTCTATA
LOC_Os12g33960
OsAffx.32334.1.S1_s_at--199--81513Chr12:20445206..20445230 (25 bp)
GGAAAGATCCGGTCTAGTTCTATAC
LOC_Os12g33960
Target Sequence 
GAGAATGACACCATCATCCTGGGCTATATTTCAGGAAAGATCCGGTCTAGTTCTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32334.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis