Browse Element(s) Details


OsAffx.32010.4.S1_at

Description tigr:9640.m03284
TID=OsAffx.32010.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to maturase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3399011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33960OsAffx.32009.2.S1_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_s_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_x_at7/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32336.1.A1_at5/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32335.1.A1_at1/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g34080OsAffx.32277.1.S1_x_at11/1112+20448493..20450249expressed protein
LOC_Os12g34080OsAffx.1869.1.S1_at11/1112+20448493..20450249expressed protein
LOC_Os12g33980NANA12+20463491..20464756retrotransposon protein, putative, unclassified
LOC_Os12g33990OsAffx.32010.2.S1_s_at11/1112+20468512..20470653hypothetical protein
LOC_Os12g33990OsAffx.32010.4.S1_at11/1112+20468512..20470653hypothetical protein
LOC_Os12g34000NANA12+20472986..20476347hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32010.4.S1_at--76--4692Chr12:20470165..20470189 (25 bp)
GCGGTTCAACTAGCGGAGACTCTTG
LOC_Os12g33990
OsAffx.32010.4.S1_at--853--2272Chr12:20470205..20470229 (25 bp)
AAAGTCCCCAAGTTAGCGTATTATG
LOC_Os12g33990
OsAffx.32010.4.S1_at--838--7651Chr12:20470264..20470288 (25 bp)
GGGATCCCGTTGTTGCATAGCTCAG
LOC_Os12g33990
OsAffx.32010.4.S1_at--688--5952Chr12:20470293..20470317 (25 bp)
GAGCAAGGTGCCATCAGGCGTTCAA
LOC_Os12g33990
OsAffx.32010.4.S1_at--906--2491Chr12:20470316..20470340 (25 bp)
AACAGGCAGTCTCACGATCGGGCAT
LOC_Os12g33990
OsAffx.32010.4.S1_at--641--6391Chr12:20470331..20470355 (25 bp)
GATCGGGCATGAGTGTCCTGAAGAC
LOC_Os12g33990
OsAffx.32010.4.S1_at--362--51Chr12:20470359..20470383 (25 bp)
ATTGTATACTCCCTTTGGTCGGAAG
LOC_Os12g33990
OsAffx.32010.4.S1_at--417--8351Chr12:20470410..20470434 (25 bp)
GGCGGGATCTTTCAGCAGCGAATTC
LOC_Os12g33990
OsAffx.32010.4.S1_at--344--10651Chr12:20470432..20470456 (25 bp)
TTCCCCATACAGATAGAGGCGCCTA
LOC_Os12g33990
OsAffx.32010.4.S1_at--933--5291Chr12:20470472..20470496 (25 bp)
GAAGGCTTCGGGATCGAGGTCTCAT
LOC_Os12g33990
OsAffx.32010.4.S1_at--805--10052Chr12:20470559..20470583 (25 bp)
TAGTAAATTGGTCCGCGGGCATCGC
LOC_Os12g33990
Target Sequence 
GCGGTTCAACTAGCGGAGACTCTTGGAAAAAATGGACTAAAAAGTCCCCAAGTTAGCGTATTATGGGGGACCGTCAAGCA
CATCCGGCAAAGATCAAGGGGGATCCCGTTGTTGCATAGCTCAGGTCAGAGCAAGGTGCCATCAGGCGTTCAACAGGCAG
TCTCACGATCGGGCATGAGTGTCCTGAAGACAAAATTGTATACTCCCTTTGGTCGGAAGGCGGCGGGGGAAGGAAGGGGG
CACTGGGCGGGATCTTTCAGCAGCGAATTCCCCATACAGATAGAGGCGCCTATCAAAAAGATACTCCGAAGGCTTCGGGA
TCGAGGTCTCATTAGCCGAAGAAGACCCAGGCCAATCCACGTGGCCTCTTTGACCAACGTCAGCGACAGAGACATAGTAA
ATTGGTCCGCGGGCATCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32010.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis