Browse Element(s) Details


OsAffx.32336.1.A1_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=rpl14
TID=OsAffx.32336.1
CNT=1
FEA=DNA_64
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein L14 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=ribosomal protein L14
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g339605/11translation initiation factor IF-1 family protein
LOC_Os08g176502/11Complex 1 protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33920Os.47999.3.A1_at5/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.47999.3.A1_x_at3/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.47999.2.A1_x_at2/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.45173.1.S1_x_at1/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920OsAffx.20733.1.A1_x_at1/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33930OsAffx.19953.7.S1_s_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.32275.1.S1_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.32273.1.S1_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.19953.6.S1_s_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33939OsAffx.32277.1.S1_x_at5/1112+20430372..20430725hypothetical protein
LOC_Os12g33950OsAffx.32008.1.S1_at11/1112+20440473..20442136Myb-related protein, putative
LOC_Os12g33960OsAffx.32009.2.S1_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_s_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_x_at7/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32336.1.A1_at5/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32335.1.A1_at1/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g34080OsAffx.32277.1.S1_x_at11/1112+20448493..20450249expressed protein
LOC_Os12g34080OsAffx.1869.1.S1_at11/1112+20448493..20450249expressed protein
LOC_Os12g33980NANA12+20463491..20464756retrotransposon protein, putative, unclassified
LOC_Os12g33990OsAffx.32010.2.S1_s_at11/1112+20468512..20470653hypothetical protein
LOC_Os12g33990OsAffx.32010.4.S1_at11/1112+20468512..20470653hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32336.1.A1_at--264--31512Chr12:20444923..20444947 (25 bp)
AATTCAATTCTCTCAATTCCTCGGC
LOC_Os12g33960
OsAffx.32336.1.A1_at--69--31710Chr12:20444937..20444961 (25 bp)
AATTCCTCGGCGATCGCGCCAAAAA
LOC_Os12g33960
OsAffx.32336.1.A1_at--975--88313Chr12:20444995..20445019 (25 bp)
TGATAACCGCTGCATTGTCGTCATA
LOC_Os12g33960
OsAffx.32336.1.A1_at--31--46517Chr12:20445020..20445044 (25 bp)
GCGTATTATTATACCGTCTTCGCAT
LOC_Os12g33960
OsAffx.32336.1.A1_at--113--17916Chr12:20445032..20445056 (25 bp)
ACCGTCTTCGCATTTGAACTCTTTA
LOC_Os12g33960
OsAffx.32336.1.A1_at--647--98913Chr12:5656892..5656916 (25 bp)
TACTTCGGATCTTTCTAGAGGCATT
NONE
OsAffx.32336.1.A1_at--239--76111Chr12:5656919..5656943 (25 bp)
GGGCACTGCGTCTTTGATTACAGCA
NONE
OsAffx.32336.1.A1_at--102--18712Chr12:5656961..5656985 (25 bp)
ACGAGCATATCGCTGATTACTAGCA
NONE
OsAffx.32336.1.A1_at--884--100112Chr12:5656981..5657005 (25 bp)
TAGCAGCTCCTATGACTCGAATACA
NONE
OsAffx.32336.1.A1_at--1148--98510Chr12:5657002..5657026 (25 bp)
TACACATCAATTTTCGAGCTCCACT
NONE
OsAffx.32336.1.A1_at--726--31310Chr12:5657010..5657034 (25 bp)
AATTTTCGAGCTCCACTGTTATCTG
NONE
Target Sequence 
AATTCAATTCTCTCAATTCCTCGGCGATCGCGCCAAAAACGCGAGTTCCTTTTGGATTTCCTTTTTGATCAATGATAACC
GCTGCATTGTCGTCATAGCGTATTATTATACCGTCTTCGCATTTGAACTCTTTACATGTACGTACAATTACAGCTCGAAT
TACTTCGGATCTTTCTAGAGGCATTTGGGGCACTGCGTCTTTGATTACAGCAACAATAACATCACCAATACGAGCATATC
GCTGATTACTAGCAGCTCCTATGACTCGAATACACATCAATTTTCGAGCTCCACTGTTATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32336.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis