Browse Element(s) Details


OsAffx.19953.7.S1_s_at

Description tigr:9640.m03278
TID=OsAffx.19953.7
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3393011/11Ribosomal protein S12 containing protein
LOC_Os12g3407011/11Mitochondrial ribosomal protein S3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33890NANA12+20400074..20402999retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33900Os.10703.2.S1_x_at1/1112+20403315..20406201retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33910Os.47999.3.A1_at5/1112+20406477..20416765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33910Os.47999.3.A1_x_at3/1112+20406477..20416765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33910Os.47999.2.A1_x_at2/1112+20406477..20416765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33910OsAffx.20733.1.A1_x_at1/1112+20406477..20416765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.47999.3.A1_at5/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.47999.3.A1_x_at3/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.47999.2.A1_x_at2/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920Os.45173.1.S1_x_at1/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33920OsAffx.20733.1.A1_x_at1/1112+20417030..20421387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33930OsAffx.19953.7.S1_s_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.32275.1.S1_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.32273.1.S1_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.19953.6.S1_s_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33939OsAffx.32277.1.S1_x_at5/1112+20430372..20430725hypothetical protein
LOC_Os12g33950OsAffx.32008.1.S1_at11/1112+20440473..20442136Myb-related protein, putative
LOC_Os12g33960OsAffx.32009.2.S1_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_s_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_x_at7/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32336.1.A1_at5/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32335.1.A1_at1/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g34080OsAffx.32277.1.S1_x_at11/1112+20448493..20450249expressed protein
LOC_Os12g34080OsAffx.1869.1.S1_at11/1112+20448493..20450249expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0006412biological_processprotein biosynthesis
GO:0045333biological_processcellular respiration
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005740cellular_componentmitochondrial envelope
GO:0005763cellular_componentmitochondrial small ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19953.7.S1_s_at--799--5313Chr12:20658440..20658464 (25 bp)
GAAGGTCATAATTCGCAGGAACATT
NONE
OsAffx.19953.7.S1_s_at--951--93Chr12:20658450..20658474 (25 bp)
ATTCGCAGGAACATTCTATAGTCTT
NONE
OsAffx.19953.7.S1_s_at--600--8173Chr12:20658457..20658481 (25 bp)
GGAACATTCTATAGTCTTAGTCAGA
NONE
OsAffx.19953.7.S1_s_at--490--9533Chr12:20658464..20658488 (25 bp)
TCTATAGTCTTAGTCAGAGGAGGTA
NONE
OsAffx.19953.7.S1_s_at--784--6933Chr12:20658486..20658510 (25 bp)
GTAGAGTGAAAGATTCGCCAGGTGT
NONE
OsAffx.19953.7.S1_s_at--761--93Chr12:20658498..20658522 (25 bp)
ATTCGCCAGGTGTGAAATCCCATCG
NONE
OsAffx.19953.7.S1_s_at--984--7433Chr12:20658507..20658531 (25 bp)
GTGTGAAATCCCATCGTATTCGAGG
NONE
OsAffx.19953.7.S1_s_at--1026--3033Chr12:20658513..20658537 (25 bp)
AATCCCATCGTATTCGAGGAGTCAA
NONE
OsAffx.19953.7.S1_s_at--266--9393Chr12:20658520..20658544 (25 bp)
TCGTATTCGAGGAGTCAAGGATTTA
NONE
OsAffx.19953.7.S1_s_at--914--9073Chr12:20658534..20658558 (25 bp)
TCAAGGATTTACTGGGAATTCCGGA
NONE
OsAffx.19953.7.S1_s_at--638--10473Chr12:20658542..20658566 (25 bp)
TTACTGGGAATTCCGGATCGTAGAA
NONE
Target Sequence 
GAAGGTCATAATTCGCAGGAACATTCTATAGTCTTAGTCAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTGAAATCCCA
TCGTATTCGAGGAGTCAAGGATTTACTGGGAATTCCGGATCGTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19953.7.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis