Browse Element(s) Details


OsAffx.1869.1.S1_at

Description gb:AK106606.1
DB_XREF= gi:32991815
TID=OsAffx.1869.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-E06, full insert sequence.
FL= gb:AK106606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3408011/11expressed protein
LOC_Os01g339603/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33930OsAffx.19953.7.S1_s_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.32275.1.S1_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.32273.1.S1_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.19953.6.S1_s_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33939OsAffx.32277.1.S1_x_at5/1112+20430372..20430725hypothetical protein
LOC_Os12g33950OsAffx.32008.1.S1_at11/1112+20440473..20442136Myb-related protein, putative
LOC_Os12g33960OsAffx.32009.2.S1_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_s_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_x_at7/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32336.1.A1_at5/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32335.1.A1_at1/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g34080OsAffx.32277.1.S1_x_at11/1112+20448493..20450249expressed protein
LOC_Os12g34080OsAffx.1869.1.S1_at11/1112+20448493..20450249expressed protein
LOC_Os12g33980NANA12+20463491..20464756retrotransposon protein, putative, unclassified
LOC_Os12g33990OsAffx.32010.2.S1_s_at11/1112+20468512..20470653hypothetical protein
LOC_Os12g33990OsAffx.32010.4.S1_at11/1112+20468512..20470653hypothetical protein
LOC_Os12g34000NANA12+20472986..20476347hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1869.1.S1_at--831--5654Chr12:20663660..20663684 (25 bp)
GACTTGAAACTTGAACTCCCCAAAG
NONE
OsAffx.1869.1.S1_at--899--6514Chr12:20663589..20663613 (25 bp)
GATATTATCGATCGCATGGCCCAAT
NONE
OsAffx.1869.1.S1_at--612--3214Chr12:20663575..20663599 (25 bp)
CATGGCCCAATTAGACCCGGACCGG
NONE
OsAffx.1869.1.S1_at--99--4174Chr12:20663560..20663584 (25 bp)
CCCGGACCGGGATGGATTCTGGAAT
NONE
OsAffx.1869.1.S1_at--656--5134Chr12:20663533..20663557 (25 bp)
GCAAAAGGACCACTTAGTCGCTCAT
NONE
OsAffx.1869.1.S1_at--132--2054Chr12:20663522..20663546 (25 bp)
ACTTAGTCGCTCATGGAATCCTCAA
NONE
OsAffx.1869.1.S1_at--702--2774Chr12:20663489..20663513 (25 bp)
AAGAGTATACCTTACAGGGACTGAT
NONE
OsAffx.1869.1.S1_at--267--8514Chr12:20663447..20663471 (25 bp)
TGGAAAAATCCGGTACTAGCTGTAA
NONE
OsAffx.1869.1.S1_at--384--5535Chr12:20663381..20663405 (25 bp)
GAAAGAACTACGAAAGCAACCCTGA
NONE
OsAffx.1869.1.S1_at--815--5155Chr12:20663366..20663390 (25 bp)
GCAACCCTGATCTTTCTTCTATGAA
NONE
OsAffx.1869.1.S1_at--1116--2275Chr12:20663340..20663364 (25 bp)
AAAGTACGTAGGCACTCCTCAGCGA
NONE
Target Sequence 
GACTTGAAACTTGAACTCCCCAAAGGGAAGTAAGCGACGATGAGATAGACTCAATCATTTTTATTAAGAAAGATATTATC
GATCGCATGGCCCAATTAGACCCGGACCGGGATGGATTCTGGAATGAGCAAAAGGACCACTTAGTCGCTCATGGAATCCT
CAATAAGGGTAAAGAGTATACCTTACAGGGACTGATAAACCTTTCTAAAAAATTGGAAAAATCCGGTACTAGCTGTAATG
TATTCAATAAAATAAAGAAGAATGACCGTAAATCATTTCGAAAGAACTACGAAAGCAACCCTGATCTTTCTTCTATGAAG
AAAGTACGTAGGCACTCCTCAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis