Browse Element(s) Details


OsAffx.32010.2.S1_s_at

Description gb:NM_189741.1
DB_XREF= gi:34906565
GEN=P0660F12.12
TID=OsAffx.32010.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0660F12.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3399011/11hypothetical protein
LOC_Os01g7162011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33960OsAffx.32009.2.S1_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_s_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_x_at7/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32336.1.A1_at5/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32335.1.A1_at1/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g34080OsAffx.32277.1.S1_x_at11/1112+20448493..20450249expressed protein
LOC_Os12g34080OsAffx.1869.1.S1_at11/1112+20448493..20450249expressed protein
LOC_Os12g33980NANA12+20463491..20464756retrotransposon protein, putative, unclassified
LOC_Os12g33990OsAffx.32010.2.S1_s_at11/1112+20468512..20470653hypothetical protein
LOC_Os12g33990OsAffx.32010.4.S1_at11/1112+20468512..20470653hypothetical protein
LOC_Os12g34000NANA12+20472986..20476347hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32010.2.S1_s_at--1147--9812Chr12:20469857..20469881 (25 bp)
TACAAAAACGTATCACCCACTTCCT
LOC_Os12g33990
OsAffx.32010.2.S1_s_at--541--2372Chr12:20469862..20469886 (25 bp)
AAACGTATCACCCACTTCCTACAAT
LOC_Os12g33990
OsAffx.32010.2.S1_s_at--120--3812Chr12:20469909..20469933 (25 bp)
CTCCGCAGAATCAACAACCATAGCT
LOC_Os12g33990
OsAffx.32010.2.S1_s_at--587--3332Chr12:20469935..20469959 (25 bp)
CACGGAGTACGGTAGAATTCCTCGG
LOC_Os12g33990
OsAffx.32010.2.S1_s_at--374--7852Chr12:20469945..20469969 (25 bp)
GGTAGAATTCCTCGGTACGGTCATT
LOC_Os12g33990
OsAffx.32010.2.S1_s_at--926--1452Chr12:20469948..20469972 (25 bp)
AGAATTCCTCGGTACGGTCATTCGG
LOC_Os12g33990
OsAffx.32010.2.S1_s_at--437--9232Chr12:20469953..20469977 (25 bp)
TCCTCGGTACGGTCATTCGGGAAGT
LOC_Os12g33990
OsAffx.32010.2.S1_s_at--841--4192Chr12:20469981..20470005 (25 bp)
CCCGAGGACGACTCCCATACAATTC
LOC_Os12g33990
OsAffx.32010.2.S1_s_at--696--1612Chr12:20470013..20470037 (25 bp)
AGCTGGAGAAGCGTCTACGGGTAAA
LOC_Os12g33990
OsAffx.32010.2.S1_s_at--185--8052Chr12:20470017..20470041 (25 bp)
GGAGAAGCGTCTACGGGTAAAGCAC
LOC_Os12g33990
OsAffx.32010.2.S1_s_at--175--4652Chr12:20470023..20470047 (25 bp)
GCGTCTACGGGTAAAGCACCGTATC
LOC_Os12g33990
Target Sequence 
TACAAAAACGTATCACCCACTTCCTACAATCCGGCCCGAACCTTTGGGTGAGCTCCGCAGAATCAACAACCATAGCTACA
CGGAGTACGGTAGAATTCCTCGGTACGGTCATTCGGGAAGTTCCCCCGAGGACGACTCCCATACAATTCCTGCGAGAGCT
GGAGAAGCGTCTACGGGTAAAGCACCGTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32010.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis