Browse Element(s) Details

Os.7027.1.S1_s_at

Description

gb:AK107426.1
DB_XREF= gi:32992635
TID=Os.7027.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7027 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-128-A02, full insert sequence.
FL= gb:AK107426.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g49670	11/11	Cytidylyltransferase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g49590	OsAffx.11534.2.S1_at	11/11	1	+	28841532..28847026	receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590	Os.11986.2.S1_x_at	11/11	1	+	28841532..28847026	receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590	OsAffx.11534.1.S1_x_at	7/11	1	+	28841532..28847026	receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590	Os.11986.1.S1_at	2/11	1	+	28841532..28847026	receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590	OsAffx.24523.1.S1_at	1/11	1	+	28841532..28847026	receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49600	OsAffx.21488.1.S1_at	11/11	1	+	28849330..28850221	hypothetical protein
LOC_Os01g49614	Os.11986.1.S1_at	11/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	OsAffx.11534.1.S1_x_at	11/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.11986.3.S1_x_at	11/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.11986.3.S1_at	11/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.41662.1.S1_x_at	9/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	OsAffx.32334.1.S1_s_at	7/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	OsAffx.32334.1.S1_x_at	6/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	OsAffx.32238.1.A1_at	5/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.11986.2.S1_x_at	4/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.41662.1.S1_at	3/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.27097.1.A1_at	2/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.27097.1.A1_x_at	1/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.19294.1.S1_at	1/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49630	Os.28525.1.S1_at	11/11	1	+	28861668..28863344	expressed protein
LOC_Os01g49640	Os.18388.1.S1_at	11/11	1	+	28864720..28865464	Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os01g49650	Os.18388.3.S1_at	11/11	1	+	28865645..28866205	Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g49660	OsAffx.23728.1.S1_at	11/11	1	+	28866841..28868101	Reticulon family protein
LOC_Os01g49670	Os.7027.1.S1_a_at	11/11	1	+	28868405..28872257	Cytidylyltransferase family protein, expressed
LOC_Os01g49670	Os.7027.1.S1_s_at	11/11	1	+	28868405..28872257	Cytidylyltransferase family protein, expressed
LOC_Os01g49680	Os.32672.1.S1_x_at	10/11	1	+	28875541..28880596	DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680	Os.32672.2.S1_at	10/11	1	+	28875541..28880596	DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680	Os.32672.3.S1_at	10/11	1	+	28875541..28880596	DNA repair helicase ercc3, putative, expressed
LOC_Os01g49690	Os.18690.1.S1_at	11/11	1	+	28882793..28887542	Serine/threonine protein phosphatase 6, putative, expressed
LOC_Os01g49700	OsAffx.2285.1.S1_at	11/11	1	+	28888541..28888850	hypothetical protein
LOC_Os01g49710	Os.38022.2.S1_x_at	11/11	1	+	28893636..28894510	Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49710	Os.38022.1.S1_at	3/11	1	+	28893636..28894510	Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49720	OsAffx.11535.1.S1_at	11/11	1	+	28895823..28896613	glutathione S-transferase GSTU6, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.7027.1.S1_s_at--1089--651	1	Chr01:28868938..28868962 (25 bp)	GATTTGGACATTCCAGTCGAGTTAA	LOC_Os01g49670
Os.7027.1.S1_s_at--919--1017	1	Chr01:28868897..28868921 (25 bp)	TATACCAGAGGAGAAGTTTCGCATG	LOC_Os01g49670
Os.7027.1.S1_s_at--497--109	1	Chr01:28868840..28868864 (25 bp)	AGGGCCTTGATGTATCAAACATGCT	LOC_Os01g49670
Os.7027.1.S1_s_at--995--1	1	Chr01:28868685..28868709 (25 bp)	ATTGGATGAACTTCGTGAACCGTCA	LOC_Os01g49670
Os.7027.1.S1_s_at--437--711	1	Chr01:28868651..28868675 (25 bp)	GTCATGCCATAGGTTTTGGCCCTAC	LOC_Os01g49670
Os.7027.1.S1_s_at--390--1085	1	Chr01:28868636..28868660 (25 bp)	TTGGCCCTACGAATAACAACTTCTT	LOC_Os01g49670
Os.7027.1.S1_s_at--270--593	1	Chr01:28868581..28868605 (25 bp)	GAGATGTAAAAAACCTACTTCCCTG	LOC_Os01g49670
Os.7027.1.S1_s_at--999--987	1	Chr01:28868566..28868590 (25 bp)	TACTTCCCTGTTTATCTTTCTCTTT	LOC_Os01g49670
Os.7027.1.S1_s_at--168--823	1	Chr01:28868528..28868552 (25 bp)	GGCAATTATGCCCAGTTGTCCTTTA	LOC_Os01g49670
Os.7027.1.S1_s_at--193--455	1	Chr01:28868519..28868543 (25 bp)	GCCCAGTTGTCCTTTATACTATTCT	LOC_Os01g49670
Os.7027.1.S1_s_at--1013--797	1	Chr01:28868484..28868508 (25 bp)	GGATGCTTTTCACATGTACCTGTAC	LOC_Os01g49670

Target Sequence

GATTTGGACATTCCAGTCGAGTTAAGGGAAATGTTTATCTCTATACCAGAGGAGAAGTTTCGCATGGATATTTCATCTAC
AGATATAAGAAAAAAACAAGGGCCTTGATGTATCAAACATGCTGTTCTTCTTATATACTCCCCCCGTCACCCCGTCCTAA
AATATAGCAACATGTCTAATCGATTACTAAGTTGCTATATTTTGGAACAGGGGGAATAGTAGATTCAAAATAAAAAAATT
GGTGGTTCAAATTATTGGATGAACTTCGTGAACCGTCATGGCAGTGTGTCATGCCATAGGTTTTGGCCCTACGAATAACA
ACTTCTTTTCTGTATCTTAGTAAAACAACAGTGGTTGGAGATGTAAAAAACCTACTTCCCTGTTTATCTTTCTCTTTTCT
TGGATGATTAGGCAATTATGCCCAGTTGTCCTTTATACTATTCTTTTTTTGTTTGGATGCTTTTCACATGTACCTGTAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis