Browse Element(s) Details


OsAffx.23728.1.S1_at

Description tigr:9629.m04799
TID=OsAffx.23728.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to seed maturation protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4966011/11Reticulon family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49590OsAffx.11534.2.S1_at11/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590Os.11986.2.S1_x_at11/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590OsAffx.11534.1.S1_x_at7/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590Os.11986.1.S1_at2/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590OsAffx.24523.1.S1_at1/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49600OsAffx.21488.1.S1_at11/111+28849330..28850221hypothetical protein
LOC_Os01g49614Os.11986.1.S1_at11/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614OsAffx.11534.1.S1_x_at11/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.11986.3.S1_x_at11/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.11986.3.S1_at11/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.41662.1.S1_x_at9/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614OsAffx.32334.1.S1_s_at7/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614OsAffx.32334.1.S1_x_at6/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614OsAffx.32238.1.A1_at5/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.11986.2.S1_x_at4/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.41662.1.S1_at3/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.27097.1.A1_at2/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.27097.1.A1_x_at1/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.19294.1.S1_at1/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49630Os.28525.1.S1_at11/111+28861668..28863344expressed protein
LOC_Os01g49640Os.18388.1.S1_at11/111+28864720..28865464Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os01g49650Os.18388.3.S1_at11/111+28865645..28866205Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g49660OsAffx.23728.1.S1_at11/111+28866841..28868101Reticulon family protein
LOC_Os01g49670Os.7027.1.S1_a_at11/111+28868405..28872257Cytidylyltransferase family protein, expressed
LOC_Os01g49670Os.7027.1.S1_s_at11/111+28868405..28872257Cytidylyltransferase family protein, expressed
LOC_Os01g49680Os.32672.1.S1_x_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.2.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.3.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49690Os.18690.1.S1_at11/111+28882793..28887542Serine/threonine protein phosphatase 6, putative, expressed
LOC_Os01g49700OsAffx.2285.1.S1_at11/111+28888541..28888850hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23728.1.S1_at--594--2851Chr01:28866907..28866931 (25 bp)
AAGTCGATCCACAAGCTTCTTGGTG
LOC_Os01g49660
OsAffx.23728.1.S1_at--1041--3091Chr01:28867146..28867170 (25 bp)
AATATAATTCCGCTCCTTTGCCAGA
LOC_Os01g49660
OsAffx.23728.1.S1_at--22--3691Chr01:28867161..28867185 (25 bp)
CTTTGCCAGATTGCCATTCTTGCCA
LOC_Os01g49660
OsAffx.23728.1.S1_at--1005--111Chr01:28867176..28867200 (25 bp)
ATTCTTGCCATGCTTGTGATCTTCA
LOC_Os01g49660
OsAffx.23728.1.S1_at--161--2291Chr01:28867208..28867232 (25 bp)
AAATGCCGCACCACTCTTGGACAGG
LOC_Os01g49660
OsAffx.23728.1.S1_at--17--3071Chr01:28867371..28867395 (25 bp)
AATCATCATCTCTGAACATGCCTTC
LOC_Os01g49660
OsAffx.23728.1.S1_at--451--8491Chr01:28867403..28867427 (25 bp)
TGGCATTGACCGTCCATTACAAACT
LOC_Os01g49660
OsAffx.23728.1.S1_at--639--7031Chr01:28867431..28867455 (25 bp)
GTACACTGTATCTGTTCTTTACGAC
LOC_Os01g49660
OsAffx.23728.1.S1_at--1108--6031Chr01:28867479..28867708 (25 bp)
GAGATTTCTCCTGTTCTGGACTAAC
LOC_Os01g49660
OsAffx.23728.1.S1_at--449--7931Chr01:28867739..28867763 (25 bp)
GGATCTCTATTGGTATTGTCGGCGA
LOC_Os01g49660
OsAffx.23728.1.S1_at--955--10191Chr01:28867796..28867952 (25 bp)
TATATTGGATTCTTGTGCGCGCACA
LOC_Os01g49660
Target Sequence
AAGTCGATCCACAAGCTTCTTGGTGGAGGTCAAGTAGAATACAATATAATTCCGCTCCTTTGCCAGATTGCCATTCTTGC
CATGCTTGTGATCTTCATTTGGTCAAATGCCGCACCACTCTTGGACAGGGCCCCTCCAAGGATCCCAGAAATCATCATCT
CTGAACATGCCTTCAGAGAAATGGCATTGACCGTCCATTACAAACTAACGTACACTGTATCTGTTCTTTACGACATTGCA
TGTGGAAAGGATCTGAAGAGATTTCTCCTGTTCTGGACTAACAATCAGATTGTTTATGATATTAAGGTGGTTGGATCTCT
ATTGGTATTGTCGGCGATTGGAAGTTCTTGCAGCTTGACAAGTCTACTATATATTGGATTCTTGTGCGCGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis