Browse Element(s) Details

Os.18388.3.S1_at

Description

gb:AU029306
DB_XREF= gi:3762554
DB_XREF=AU029306
CLONE=E30132_6Z
TID=Os.18388.3
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0034C09.16 (P0034C09.16), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g49650	11/11	Protease inhibitor/seed storage/LTP family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g49580	Os.11986.3.S1_x_at	6/11	1	+	28839944..28841121	expressed protein
LOC_Os01g49580	Os.11986.3.S1_at	4/11	1	+	28839944..28841121	expressed protein
LOC_Os01g49580	Os.27097.1.A1_at	2/11	1	+	28839944..28841121	expressed protein
LOC_Os01g49580	Os.27097.1.A1_x_at	1/11	1	+	28839944..28841121	expressed protein
LOC_Os01g49590	OsAffx.11534.2.S1_at	11/11	1	+	28841532..28847026	receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590	Os.11986.2.S1_x_at	11/11	1	+	28841532..28847026	receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590	OsAffx.11534.1.S1_x_at	7/11	1	+	28841532..28847026	receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590	Os.11986.1.S1_at	2/11	1	+	28841532..28847026	receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590	OsAffx.24523.1.S1_at	1/11	1	+	28841532..28847026	receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49600	OsAffx.21488.1.S1_at	11/11	1	+	28849330..28850221	hypothetical protein
LOC_Os01g49614	Os.11986.1.S1_at	11/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	OsAffx.11534.1.S1_x_at	11/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.11986.3.S1_x_at	11/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.11986.3.S1_at	11/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.41662.1.S1_x_at	9/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	OsAffx.32334.1.S1_s_at	7/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	OsAffx.32334.1.S1_x_at	6/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	OsAffx.32238.1.A1_at	5/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.11986.2.S1_x_at	4/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.41662.1.S1_at	3/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.27097.1.A1_at	2/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.27097.1.A1_x_at	1/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.19294.1.S1_at	1/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49630	Os.28525.1.S1_at	11/11	1	+	28861668..28863344	expressed protein
LOC_Os01g49640	Os.18388.1.S1_at	11/11	1	+	28864720..28865464	Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os01g49650	Os.18388.3.S1_at	11/11	1	+	28865645..28866205	Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g49660	OsAffx.23728.1.S1_at	11/11	1	+	28866841..28868101	Reticulon family protein
LOC_Os01g49670	Os.7027.1.S1_a_at	11/11	1	+	28868405..28872257	Cytidylyltransferase family protein, expressed
LOC_Os01g49670	Os.7027.1.S1_s_at	11/11	1	+	28868405..28872257	Cytidylyltransferase family protein, expressed
LOC_Os01g49680	Os.32672.1.S1_x_at	10/11	1	+	28875541..28880596	DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680	Os.32672.2.S1_at	10/11	1	+	28875541..28880596	DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680	Os.32672.3.S1_at	10/11	1	+	28875541..28880596	DNA repair helicase ercc3, putative, expressed
LOC_Os01g49690	Os.18690.1.S1_at	11/11	1	+	28882793..28887542	Serine/threonine protein phosphatase 6, putative, expressed
LOC_Os01g49700	OsAffx.2285.1.S1_at	11/11	1	+	28888541..28888850	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006869	biological_process	lipid transport
GO:0008289	molecular_function	lipid binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.18388.3.S1_at--1060--1059	1	Chr01:28866131..28866155 (25 bp)	TTCTGTTTTTTCCACCGTTGTCGCG	LOC_Os01g49650
Os.18388.3.S1_at--789--273	1	Chr01:28866028..28866052 (25 bp)	AAGAAGGCTTCGTGCGACCTGATGC	LOC_Os01g49650
Os.18388.3.S1_at--270--887	1	Chr01:28866009..28866033 (25 bp)	TGATGCAGCTGAGCCCGTGCGTCAG	LOC_Os01g49650
Os.18388.3.S1_at--525--159	1	Chr01:28865914..28865938 (25 bp)	AGCTGCCTGTGCCTCTACAAGGACG	LOC_Os01g49650
Os.18388.3.S1_at--718--811	1	Chr01:28865894..28865918 (25 bp)	GGACGACCCCAAAGTGAAGCGCATT	LOC_Os01g49650
Os.18388.3.S1_at--655--279	1	Chr01:28865851..28865875 (25 bp)	AAGAGGGTCTTCACCGCGTGCAAGG	LOC_Os01g49650
Os.18388.3.S1_at--354--21	1	Chr01:28865798..28865822 (25 bp)	ATTTGACCATTGTTCAGTGAGGCAG	LOC_Os01g49650
Os.18388.3.S1_at--201--889	1	Chr01:28865781..28865805 (25 bp)	TGAGGCAGAAAACCTGTCACCGCTC	LOC_Os01g49650
Os.18388.3.S1_at--927--413	1	Chr01:28865761..28865785 (25 bp)	CGCTCGCAGTACTTCTCTCGAGAAA	LOC_Os01g49650
Os.18388.3.S1_at--424--307	1	Chr01:28865703..28865727 (25 bp)	AATCTTGGCATGTACTGTGCATACA	LOC_Os01g49650
Os.18388.3.S1_at--209--109	1	Chr01:28865679..28865703 (25 bp)	AGTGTACTTCAAGCTACCCAAACTC	LOC_Os01g49650

Target Sequence

TTCTGTTTTTTCCACCGTTGTCGCGNCGATCGCCATCGCCGNGCTNGCTGAGCAGCCTCCTCCTCCTGCAGGCTACCCCG
GCCGCGGCCAGCGCGAGGGCCTCGAAGAAGGCTTCGTGCGACCTGATGCAGCTGAGCCCGTGCGTCAGNGCGTTNCTCCG
GTGTGGGGCAGGGCTCGCCATCGTCCGCGTGCTGCTCCAAGCTCAAGGCGCAGGGCTCCAGCTGCCTGTGCCTCTACAAG
GACGACCCCAAAGTGAAGCGCATTGTCANCTNCAATCGNACNAAGAGGGTCTTCACCGCGTGCAAGGTGCCCGNGCCGAA
CTNCTAAGNCTTTGNATTTGACCATTGTTCAGTGAGGCAGAAAACCTGTCACCGCTCGCAGTACTTCTCTCGAGAAAATT
AGCAGTAATAAACTCAGTTGAGTGCATAACAATCTTGGCATGTACTGTGCATACAGTGTACTTCAAGCTACCCAAACTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis