Browse Element(s) Details


Os.32672.1.S1_x_at

Description gb:AK060447.1
DB_XREF= gi:32970465
TID=Os.32672.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) DNA excision repair protein ERCC3-like (P0034C09.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-F08, full insert sequence.
FL= gb:AK060447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4968010/11DNA repair helicase ercc3, putative, expressed
LOC_Os10g111801/11hypothetical protein
LOC_Os09g062501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49614Os.11986.1.S1_at11/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614OsAffx.11534.1.S1_x_at11/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.11986.3.S1_x_at11/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.11986.3.S1_at11/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.41662.1.S1_x_at9/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614OsAffx.32334.1.S1_s_at7/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614OsAffx.32334.1.S1_x_at6/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614OsAffx.32238.1.A1_at5/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.11986.2.S1_x_at4/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.41662.1.S1_at3/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.27097.1.A1_at2/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.27097.1.A1_x_at1/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.19294.1.S1_at1/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49630Os.28525.1.S1_at11/111+28861668..28863344expressed protein
LOC_Os01g49640Os.18388.1.S1_at11/111+28864720..28865464Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os01g49650Os.18388.3.S1_at11/111+28865645..28866205Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g49660OsAffx.23728.1.S1_at11/111+28866841..28868101Reticulon family protein
LOC_Os01g49670Os.7027.1.S1_a_at11/111+28868405..28872257Cytidylyltransferase family protein, expressed
LOC_Os01g49670Os.7027.1.S1_s_at11/111+28868405..28872257Cytidylyltransferase family protein, expressed
LOC_Os01g49680Os.32672.1.S1_x_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.2.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.3.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49690Os.18690.1.S1_at11/111+28882793..28887542Serine/threonine protein phosphatase 6, putative, expressed
LOC_Os01g49700OsAffx.2285.1.S1_at11/111+28888541..28888850hypothetical protein
LOC_Os01g49710Os.38022.2.S1_x_at11/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49710Os.38022.1.S1_at3/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49720OsAffx.11535.1.S1_at11/111+28895823..28896613glutathione S-transferase GSTU6, putative, expressed
LOC_Os01g49730Os.57153.1.S1_at11/111+28898884..28899768expressed protein
LOC_Os01g49740Os.28814.1.S1_at11/111+28899980..28902522expressed protein
LOC_Os01g49740Os.28814.2.S1_x_at11/111+28899980..28902522expressed protein
LOC_Os01g49750Os.29043.1.S1_at11/111+28902662..28903521expressed protein
LOC_Os01g49760Os.33553.2.S1_x_at11/111+28904947..28910543expressed protein
LOC_Os01g49760Os.33553.1.S1_at11/111+28904947..28910543expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009636biological_processresponse to toxin
GO:0010224biological_processresponse to UV-B
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32672.1.S1_x_at--808--7911Chr01:28878915..28878939 (25 bp)
GGTTGGGACGTATTCTCAGGGCAAA
LOC_Os01g49680
Os.32672.1.S1_x_at--479--3091Chr01:28879466..28879490 (25 bp)
AATACAATGCGTTCTTCTACTCTCT
LOC_Os01g49680
Os.32672.1.S1_x_at--427--9531Chr01:28879481..28879505 (25 bp)
TCTACTCTCTTGTATCGACTGACAC
LOC_Os01g49680
Os.32672.1.S1_x_at--89--9171Chr01:28879783..28879807 (25 bp)
TGCCGCCACCTGAAGAATTACCTAA
LOC_Os01g49680
Os.32672.1.S1_x_at--848--6433Chr10:5963011..5963085 (24 bp)
GATCAGCTTGAACTTTTGGCACAAT
LOC_Os10g11180
Os.32672.1.S1_x_at--891--1311NONE
AGAGGATTCTGATGGCAAGGCACTT
NONE
Os.32672.1.S1_x_at--1128--5091Chr01:28880024..28880048 (25 bp)
GCACGGCGATCTGCTGGATCAATGA
LOC_Os01g49680
Os.32672.1.S1_x_at--818--3191Chr01:28880043..28880067 (25 bp)
CAATGAGTGCCTTTTCTGGATCGGG
LOC_Os01g49680
Os.32672.1.S1_x_at--832--5771Chr01:28880229..28880253 (25 bp)
GACCCTTCAAAGAGGCATTACCTGT
LOC_Os01g49680
Os.32672.1.S1_x_at--727--8831Chr01:28880277..28880301 (25 bp)
TGATAACCGGCGTTGTTTCCTTCCT
LOC_Os01g49680
Os.32672.1.S1_x_at--301--9251Chr01:28880298..28880322 (25 bp)
TCCTTTGCCTATCTCATCTGCAAAA
LOC_Os01g49680
Target Sequence 
GGTTGGGACGTATTCTCAGGGCAAAGGGTAAGCATCAAGACAGGATGGCTGGTGGAAAAGAAGAATACAATGCGTTCTTC
TACTCTCTTGTATCGACTGACACTCAGGAGATGTACTACTCAACTAAAAGGCAACAATTTCTTATTGACCAGGGATATAG
CTTCAAGGTGATCACCAGCTTGCCGCCACCTGAAGAATTACCTAACCTGAAATATTACACACTTAATGATCAGCTTGAAC
TTTTGGCACAATTGCTGAGTGCAAGGGATGACATGATTGGCATTGAGCACTTGGAAGAGGATTCTGATGGCAAGGCACTT
ATGAAAGCACGGCGATCTGCTGGATCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAGCACTGG
TAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAAGAGGCATTACCTGTTTAAGAAGCGTTATCAATGAT
CTTGATAACCGGCGTTGTTTCCTTCCTTTGCCTATCTCATCTGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32672.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis