Browse Element(s) Details


OsAffx.2285.1.S1_at

Description tigr:9629.m04803
TID=OsAffx.2285.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4970011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49640Os.18388.1.S1_at11/111+28864720..28865464Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os01g49650Os.18388.3.S1_at11/111+28865645..28866205Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g49660OsAffx.23728.1.S1_at11/111+28866841..28868101Reticulon family protein
LOC_Os01g49670Os.7027.1.S1_a_at11/111+28868405..28872257Cytidylyltransferase family protein, expressed
LOC_Os01g49670Os.7027.1.S1_s_at11/111+28868405..28872257Cytidylyltransferase family protein, expressed
LOC_Os01g49680Os.32672.1.S1_x_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.2.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.3.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49690Os.18690.1.S1_at11/111+28882793..28887542Serine/threonine protein phosphatase 6, putative, expressed
LOC_Os01g49700OsAffx.2285.1.S1_at11/111+28888541..28888850hypothetical protein
LOC_Os01g49710Os.38022.2.S1_x_at11/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49710Os.38022.1.S1_at3/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49720OsAffx.11535.1.S1_at11/111+28895823..28896613glutathione S-transferase GSTU6, putative, expressed
LOC_Os01g49730Os.57153.1.S1_at11/111+28898884..28899768expressed protein
LOC_Os01g49740Os.28814.1.S1_at11/111+28899980..28902522expressed protein
LOC_Os01g49740Os.28814.2.S1_x_at11/111+28899980..28902522expressed protein
LOC_Os01g49750Os.29043.1.S1_at11/111+28902662..28903521expressed protein
LOC_Os01g49760Os.33553.2.S1_x_at11/111+28904947..28910543expressed protein
LOC_Os01g49760Os.33553.1.S1_at11/111+28904947..28910543expressed protein
LOC_Os01g49770Os.7556.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.45918.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.7556.1.S1_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2285.1.S1_at--976--10651Chr01:28888773..28888797 (25 bp)
TTCCCGTCATCCCATGGCTGAGTGG
LOC_Os01g49700
OsAffx.2285.1.S1_at--489--7111Chr01:28888768..28888792 (25 bp)
GTCATCCCATGGCTGAGTGGCTCCA
LOC_Os01g49700
OsAffx.2285.1.S1_at--257--551Chr01:28888765..28888789 (25 bp)
ATCCCATGGCTGAGTGGCTCCACCG
LOC_Os01g49700
OsAffx.2285.1.S1_at--1076--851Chr01:28888760..28888784 (25 bp)
ATGGCTGAGTGGCTCCACCGCTTCC
LOC_Os01g49700
OsAffx.2285.1.S1_at--78--1791Chr01:28888744..28888768 (25 bp)
ACCGCTTCCTCCACGGGAGGCAATG
LOC_Os01g49700
OsAffx.2285.1.S1_at--571--9251Chr01:28888738..28888762 (25 bp)
TCCTCCACGGGAGGCAATGGGAAGT
LOC_Os01g49700
OsAffx.2285.1.S1_at--507--7471Chr01:28888715..28888739 (25 bp)
GTGGGCTTCGGCTCGAATGAGAAAA
LOC_Os01g49700
OsAffx.2285.1.S1_at--1004--5491Chr01:28888695..28888719 (25 bp)
GAAAAAGGGAACTCTCCAGGAGACA
LOC_Os01g49700
OsAffx.2285.1.S1_at--935--2531Chr01:28888686..28888710 (25 bp)
AACTCTCCAGGAGACATCTCTCATT
LOC_Os01g49700
OsAffx.2285.1.S1_at--81--8071Chr01:28888677..28888701 (25 bp)
GGAGACATCTCTCATTATCTACATA
LOC_Os01g49700
OsAffx.2285.1.S1_at--92--1411Chr01:28888675..28888699 (25 bp)
AGACATCTCTCATTATCTACATATC
LOC_Os01g49700
Target Sequence 
TTCCCGTCATCCCATGGCTGAGTGGCTCCACCGCTTCCTCCACGGGAGGCAATGGGAAGTGGGCTTCGGCTCGAATGAGA
AAAAGGGAACTCTCCAGGAGACATCTCTCATTATCTACATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis