Browse Element(s) Details


Os.19294.1.S1_at

Description gb:BM420742
DB_XREF= gi:18387544
DB_XREF=U018B08
CLONE=U018B08
TID=Os.19294.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.19294 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g564003/11Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os01g496141/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56370Os.57187.1.S1_at1/114+33385707..33385976hypothetical protein
LOC_Os04g56380Os.35344.18.S1_x_at8/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380OsAffx.22940.5.S1_at7/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380Os.35344.3.S1_x_at7/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380OsAffx.22940.5.S1_x_at4/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56390Os.51574.1.S1_at11/114+33404069..33404856expressed protein
LOC_Os04g56400Os.7879.1.S1_at11/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.7879.2.S1_at11/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.19294.1.S1_at3/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.50043.1.A1_at1/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56420Os.54165.1.S1_at10/114+33416837..33419323expressed protein
LOC_Os04g56430Os.1606.1.S1_at11/114+33422225..33423252receptor-like protein kinase 6, putative, expressed
LOC_Os04g56440Os.38313.1.S1_at10/114+33426039..33431062ENT domain containing protein, expressed
LOC_Os04g56450Os.172.2.S1_a_at11/114+33430036..33434781Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0007568biological_processaging
GO:0009621biological_processresponse to pathogenic fungi
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004356molecular_functionglutamate-ammonia ligase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19294.1.S1_at--410--6151Chr06:7625655..7626054 (25 bp)
GATCTAAACCCAGCCTAAGAAAATT
NONE
Os.19294.1.S1_at--443--1671Chr04:33407084..33407108 (25 bp)
AGCCTAAGAAAATTGGACTCCGCGT
LOC_Os04g56400
Os.19294.1.S1_at--456--5511Chr04:33407077..33407101 (25 bp)
GAAAATTGGACTCCGCGTTTGCTCT
LOC_Os04g56400
Os.19294.1.S1_at--612--4631Chr01:9297464..9297486 (23 bp)
GCGTTTGCTCTCGTGGCCTAGAAAT
NONE
Os.19294.1.S1_at--933--55935Chr10:787475..787515 (25 bp)
GAAATTCTCATATTAATCGAAGTCC
NONE
Os.19294.1.S1_at--568--4851NONE
GCTAGAGTTCATATTGGTGTACCAT
NONE
Os.19294.1.S1_at--524--8611NONE
TGGTGTACCATTTATAACTAATTGA
NONE
Os.19294.1.S1_at--879--2531NONE
AACTCCATATCAGTATACCATTTAG
NONE
Os.19294.1.S1_at--734--9331NONE
TCAGTATACCATTTAGAACTAACTA
NONE
Os.19294.1.S1_at--813--1111NONE
AGTTTGAGTCTATATTGAAATACCA
NONE
Os.19294.1.S1_at--622--8951NONE
TGAAATACCATTTATAACCTTAATT
NONE
Target Sequence 
GATCTAAACCCAGCCTAAGAAAATTGGACTCCGCGTTTGCTCTCGTGGCCTAGAAATTCTCATATTAATCGAAGTCCATA
TAGAAAAACCATTTACATAGATAATTAAAAAATAATGAATATTGGAAGAGAAGGCTAGAGTTCATATTGGTGTACCATTT
ATAACTAATTGAAATACGGAATCAGAGAAAAATAATAATAGAGTCCATATAGAAATACNNATTTTAAATAGCTTAAATTC
GAAATTAAAAAAAGGAATATTGAAAGAAAAAACTCCATATCAGTATACCATTTAGAACTAACTAAACTTTGGAATTAAAA
AAAGAAAATATAAGTAGAAGTTTGAGTCTATATTGAAATACCATTTATAACCTTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis