Browse Element(s) Details


Os.51574.1.S1_at

Description gb:AK063095.1
DB_XREF= gi:32973113
TID=Os.51574.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51574 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-B06, full insert sequence.
FL= gb:AK063095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5639011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56370Os.57187.1.S1_at1/114+33385707..33385976hypothetical protein
LOC_Os04g56380Os.35344.18.S1_x_at8/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380OsAffx.22940.5.S1_at7/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380Os.35344.3.S1_x_at7/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380OsAffx.22940.5.S1_x_at4/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56390Os.51574.1.S1_at11/114+33404069..33404856expressed protein
LOC_Os04g56400Os.7879.1.S1_at11/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.7879.2.S1_at11/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.19294.1.S1_at3/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.50043.1.A1_at1/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56420Os.54165.1.S1_at10/114+33416837..33419323expressed protein
LOC_Os04g56430Os.1606.1.S1_at11/114+33422225..33423252receptor-like protein kinase 6, putative, expressed
LOC_Os04g56440Os.38313.1.S1_at10/114+33426039..33431062ENT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51574.1.S1_at--42--6951Chr04:33404096..33404120 (25 bp)
GTAGTTAGTTGTCACCAGTCATCAG
LOC_Os04g56390
Os.51574.1.S1_at--726--1151Chr04:33404112..33404136 (25 bp)
AGTCATCAGCACAACCATGGTTATT
LOC_Os04g56390
Os.51574.1.S1_at--435--4851Chr04:33404145..33404169 (25 bp)
GCTACTCTGCTTAGTGTTTGTCTCA
LOC_Os04g56390
Os.51574.1.S1_at--909--8031Chr04:33404170..33404194 (25 bp)
GGAGTACTCGTCCTAGCAAATCTTG
LOC_Os04g56390
Os.51574.1.S1_at--194--4911Chr04:33404215..33404239 (25 bp)
GCTTCTTCACTGAGCAGGCAGCAAG
LOC_Os04g56390
Os.51574.1.S1_at--830--9371Chr04:33404250..33404274 (25 bp)
TCGAGTTCTTGGTCGCAGAGGCAGA
LOC_Os04g56390
Os.51574.1.S1_at--1054--10811Chr04:33404293..33404317 (25 bp)
TTGTCAGGACACCAATACCGGCATG
LOC_Os04g56390
Os.51574.1.S1_at--650--1551Chr04:33404702..33404726 (25 bp)
AGCTTCTCTGTTTGTCCGTGTATAA
LOC_Os04g56390
Os.51574.1.S1_at--652--7251Chr04:33404715..33404739 (25 bp)
GTCCGTGTATAATCTTCTTGTCTAG
LOC_Os04g56390
Os.51574.1.S1_at--1132--6991Chr04:33404763..33404787 (25 bp)
GTACTAAGTACTCTCTTGGACTGTT
LOC_Os04g56390
Os.51574.1.S1_at--629--8751Chr04:33404808..33404832 (25 bp)
TGTACCCTTCTTCGCAAGAGATCGA
LOC_Os04g56390
Target Sequence 
GTAGTTAGTTGTCACCAGTCATCAGCACAACCATGGTTATTGATCAGAAGCTACTCTGCTTAGTGTTTGTCTCAGGAGTA
CTCGTCCTAGCAAATCTTGCAGATGTCTCTTCTGCTGCTGCTTCTTCACTGAGCAGGCAGCAAGATCAAGTGGCTCGAGT
TCTTGGTCGCAGAGGCAGAGAACTGATAGGAGAAGGCTTGTCAGGACACCAATACCGGCATGAAGGCAAGCACAAGGAGC
AACATGAGGTAGTGGCTATGGAGGCGACGACGAAGGAGACTGCAGAGACGAAGGCAGGTTGGGTGGATGATGATGAGGGC
GCAAGAGAAGGGCTGATCGACAGCGCTGATTACAGCGGGGTGGCGATGCACTCTCCGTCTCCACCCAAACGCAAGCACCC
AAAGAAACCATAGGCTGTCAGCTTCTCTGTTTGTCCGTGTATAATCTTCTTGTCTAGCTTAGTTAGTAGGAGTACTACTA
GTACTAAGTACTCTCTTGGACTGTTAATTTCGTCATGAAATTACATGTACCCTTCTTCGCAAGAGATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis