Browse Element(s) Details


Os.50043.1.A1_at

Description gb:AK119753.1
DB_XREF= gi:37989376
TID=Os.50043.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-167-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-167-E02, full insert sequence.
FL= gb:AK119753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2759011/11Serine carboxypeptidase family protein, expressed
LOC_Os07g128501/11Protein kinase domain containing protein
LOC_Os11g437601/11Lipase family protein
LOC_Os08g333601/11transposon protein, putative, Mariner sub-class
LOC_Os08g079401/11NB-ARC domain containing protein
LOC_Os09g042101/11Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g273701/11Phospholipase D alpha 1, putative, expressed
LOC_Os07g439401/11glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os12g390301/11BED zinc finger family protein
LOC_Os06g195501/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os09g225401/11transcription factor jumonji, putative, expressed
LOC_Os04g564001/11Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g393001/11heavy metal-associated domain containing protein, expressed
LOC_Os06g430441/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g235801/11Core-2/I-Branching enzyme family protein, expressed
LOC_Os05g055201/11transposon protein, putative, Mutator sub-class
LOC_Os12g256401/11SAP domain containing protein, expressed
LOC_Os09g286701/11hypothetical protein
LOC_Os08g435301/11F-box protein interaction domain containing protein
LOC_Os10g110341/11PAP/25A associated domain containing protein, expressed
LOC_Os12g132701/11expressed protein
LOC_Os09g078001/11C2 domain-containing protein, putative, expressed
LOC_Os02g117101/11hypothetical protein
LOC_Os10g100301/11Protein kinase domain containing protein, expressed
LOC_Os03g372901/11Cytochrome P450 79A1, putative, expressed
LOC_Os05g162901/11transposon protein, putative, unclassified, expressed
LOC_Os08g284101/11Retinal pigment epithelial membrane protein, expressed
LOC_Os02g142101/11retrotransposon protein, putative, unclassified
LOC_Os03g453301/11hypothetical protein
LOC_Os11g196901/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27540NANA3+15776756..15779725transposon protein, putative, Pong sub-class, expressed
LOC_Os03g27550NANA3+15780048..15780673serine carboxypeptidase S10 family protein, putative
LOC_Os03g27560OsAffx.10931.3.S1_at11/113+15785028..15785884hypothetical protein
LOC_Os03g27570OsAffx.13079.1.S1_at9/113+15789001..15789291hypothetical protein
LOC_Os03g27580OsAffx.13079.1.S1_at11/113+15790978..15791835hypothetical protein
LOC_Os03g27590Os.50043.1.A1_at11/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.50043.1.A1_x_at11/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.1.S1_x_at10/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.1.S1_at10/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.2.S1_at3/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27610Os.7429.1.S1_at11/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27610OsAffx.32056.4.S1_x_at1/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27610OsAffx.32056.3.S1_x_at1/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27630OsAffx.3347.1.S1_at10/113+15820661..15821849hypothetical protein
LOC_Os03g27640NANA3+15824387..15826313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g27650NANA3+15826801..15827559retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006508biological_processproteolysis
GO:0006569biological_processtryptophan catabolism
GO:0006629biological_processlipid metabolism
GO:0006631biological_processfatty acid metabolism
GO:0006886biological_processintracellular protein transport
GO:0006952biological_processdefense response
GO:0007568biological_processaging
GO:0008152biological_processmetabolism
GO:0009408biological_processresponse to heat
GO:0009414biological_processresponse to water deprivation
GO:0009620biological_processresponse to fungi
GO:0009626biological_processhypersensitive response
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0009688biological_processabscisic acid biosynthesis
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0010120biological_processcamalexin biosynthesis
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016118biological_processcarotenoid catabolism
GO:0019761biological_processglucosinolate biosynthesis
GO:0042335biological_processcuticle biosynthesis
GO:0042538biological_processhyperosmotic salinity response
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0005794cellular_componentGolgi apparatus
GO:0005829cellular_componentcytosol
GO:0005886cellular_componentplasma membrane
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0016020cellular_componentmembrane
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0030136cellular_componentclathrin-coated vesicle
GO:0031225cellular_componentanchored to membrane
GO:0000166molecular_functionnucleotide binding
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004356molecular_functionglutamate-ammonia ligase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004630molecular_functionphospholipase D activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0004806molecular_functiontriacylglycerol lipase activity
GO:0005515molecular_functionprotein binding
GO:0005543molecular_functionphospholipid binding
GO:0008060molecular_functionARF GTPase activator activity
GO:0008270molecular_functionzinc ion binding
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016298molecular_functionlipase activity
GO:0016301molecular_functionkinase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016709molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD or NADH as one donor, and incorporation of one atom of oxygen
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016779molecular_functionnucleotidyltransferase activity
GO:0016787molecular_functionhydrolase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0019825molecular_functionoxygen binding
GO:0045549molecular_function9-cis-epoxycarotenoid dioxygenase activity
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50043.1.A1_at--345--2432Chr03:22895814..22896087 (25 bp)
AAAACGCATGCCACTACTAGAAAAA
NONE
Os.50043.1.A1_at--925--2531Chr03:15803419..15803443 (25 bp)
AACTCTAGTTACAAGTTTGATTTCT
LOC_Os03g27590
Os.50043.1.A1_at--848--9431Chr03:15803397..15803421 (25 bp)
TCTAAGGCCGTGTTTAAATTCAAAT
LOC_Os03g27590
Os.50043.1.A1_at--427--9293Chr12:1754362..1754382 (21 bp)
TCCGTCACAACAAATATTTAGATAT
NONE
Os.50043.1.A1_at--1152--651361Chr12:3629521..3629556 (25 bp)
GATTTGACAATGTGAACATTTGCTA
NONE
Os.50043.1.A1_at--560--331Chr03:15803123..15803147 (25 bp)
ATACTTCAAATATTATGTGCCCATA
LOC_Os03g27590
Os.50043.1.A1_at--164--10492Chr06:13294636..13294655 (20 bp)
TTAAACACAGCCTAACCTGAATTGT
NONE
Os.50043.1.A1_at--805--4431Chr03:15803062..15803086 (25 bp)
GCCTAACCTGAATTGTACGTTTACA
LOC_Os03g27590
Os.50043.1.A1_at--607--6991Chr03:15803048..15803072 (25 bp)
GTACGTTTACATGTGTTATGTTCTC
LOC_Os03g27590
Os.50043.1.A1_at--654--8671Chr03:15803037..15803061 (25 bp)
TGTGTTATGTTCTCTGCAGGTACCT
LOC_Os03g27590
Os.50043.1.A1_at--723--10571Chr03:15803028..15803052 (25 bp)
TTCTCTGCAGGTACCTGCTGATCAG
LOC_Os03g27590
Target Sequence 
AAAACGCATGCCACTACTAGAAAAACTCTAGTTACAAGTTTGATTTCTAAGGCCGTGTTTAAATTCAAATTTTTTTCGTC
AAACTTCCAACTTTTCCGTCACAACAAATATTTAGATATATGCATGGAGCATTAAATGTGGATGAAAAAAATCAATTGGA
CAGTTTGTATGTAAATTGCAAGACGAATCTTTTGAGCCTAATTACGCATTGATTTGACAATGTGAACATTTGCTAATGAC
GGATTAACTAGGCTTAATAAATTCGTCTCGCAATTTACATGCGGAATCTGTAATTTGTTTTGTTATTAGTCTACGTTTAA
TACTTCAAATATTATGTGCCCATATACTTAAAAAAAAATTTTGGCACACGAATTAAACACAGCCTAACCTGAATTGTACG
TTTACATGTGTTATGTTCTCTGCAGGTACCTGCTGATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50043.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis