Browse Element(s) Details


OsAffx.10931.3.S1_at

Description tigr:9631.m02722
TID=OsAffx.10931.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2756011/11hypothetical protein
LOC_Os04g460203/11GATA zinc finger family protein, expressed
LOC_Os04g534202/11hypothetical protein
LOC_Os01g060002/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27510OsAffx.3344.1.S1_at11/113+15758873..15763677serine carboxypeptidase S10 family protein, putative
LOC_Os03g27520OsAffx.9572.1.S1_at1/113+15765275..15767372transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27530OsAffx.25255.1.S1_at10/113+15768495..15775420Retinoid-inducible serine carboxypeptidase precursor, putative
LOC_Os03g27540NANA3+15776756..15779725transposon protein, putative, Pong sub-class, expressed
LOC_Os03g27550NANA3+15780048..15780673serine carboxypeptidase S10 family protein, putative
LOC_Os03g27560OsAffx.10931.3.S1_at11/113+15785028..15785884hypothetical protein
LOC_Os03g27570OsAffx.13079.1.S1_at9/113+15789001..15789291hypothetical protein
LOC_Os03g27580OsAffx.13079.1.S1_at11/113+15790978..15791835hypothetical protein
LOC_Os03g27590Os.50043.1.A1_at11/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.50043.1.A1_x_at11/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.1.S1_x_at10/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.1.S1_at10/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.2.S1_at3/113+15802425..15807865Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10931.3.S1_at--845--10595Chr01:4501907..4501932 (25 bp)
TTCTCCACAGCTTATTCTGTGGTGA
NONE
OsAffx.10931.3.S1_at--723--9216Chr01:4501910..4501935 (25 bp)
TCCACAGCTTATTCTGTGGTGATGA
NONE
OsAffx.10931.3.S1_at--914--275Chr01:4501947..4502414 (25 bp)
ATAGGAGCAATTTCGATAATGCAAC
NONE
OsAffx.10931.3.S1_at--14--3195Chr01:4501954..4502421 (25 bp)
CAATTTCGATAATGCAACAAGATGC
NONE
OsAffx.10931.3.S1_at--207--5154Chr01:4502410..4502434 (25 bp)
GCAACAAGATGCAATCCATAGTCTA
NONE
OsAffx.10931.3.S1_at--873--3194Chr01:4502414..4502438 (25 bp)
CAAGATGCAATCCATAGTCTATTTT
NONE
OsAffx.10931.3.S1_at--232--9737Chr01:4502439..4502463 (25 bp)
TCAAGATAAAAGAACCACCTGCTTT
NONE
OsAffx.10931.3.S1_at--133--2437Chr01:4502446..4502470 (25 bp)
AAAAGAACCACCTGCTTTTGCCAAT
NONE
OsAffx.10931.3.S1_at--393--5436Chr01:4502450..4502474 (25 bp)
GAACCACCTGCTTTTGCCAATCAGA
NONE
OsAffx.10931.3.S1_at--232--1775Chr01:4502455..4502479 (25 bp)
ACCTGCTTTTGCCAATCAGACTTTC
NONE
OsAffx.10931.3.S1_at--996--9074Chr01:4502458..4502482 (25 bp)
TGCTTTTGCCAATCAGACTTTCAGT
NONE
Target Sequence 
TTCTCCACAGCTTATTCTGTGGTGATGAAGAATTCCTCCATAGGAGCAATTTCGATAATGCAACAAGATGCAATCCATAG
TCTATTTTTCAAGATAAAAGAACCACCTGCTTTTGCCAATCAGACTTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10931.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis