Browse Element(s) Details


Os.26833.1.S1_x_at

Description gb:AK058801.1
DB_XREF= gi:32968819
TID=Os.26833.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26833 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-A09, full insert sequence.
FL= gb:AK058801.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2759010/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27540NANA3+15776756..15779725transposon protein, putative, Pong sub-class, expressed
LOC_Os03g27550NANA3+15780048..15780673serine carboxypeptidase S10 family protein, putative
LOC_Os03g27560OsAffx.10931.3.S1_at11/113+15785028..15785884hypothetical protein
LOC_Os03g27570OsAffx.13079.1.S1_at9/113+15789001..15789291hypothetical protein
LOC_Os03g27580OsAffx.13079.1.S1_at11/113+15790978..15791835hypothetical protein
LOC_Os03g27590Os.50043.1.A1_at11/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.50043.1.A1_x_at11/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.1.S1_x_at10/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.1.S1_at10/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.2.S1_at3/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27610Os.7429.1.S1_at11/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27610OsAffx.32056.4.S1_x_at1/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27610OsAffx.32056.3.S1_x_at1/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27630OsAffx.3347.1.S1_at10/113+15820661..15821849hypothetical protein
LOC_Os03g27640NANA3+15824387..15826313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g27650NANA3+15826801..15827559retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26833.1.S1_x_at--325--231Chr03:15803818..15803842 (25 bp)
ATATCTTAAATGTCGGTGCCTTTCG
LOC_Os03g27590
Os.26833.1.S1_x_at--820--7191Chr03:15803807..15803831 (25 bp)
GTCGGTGCCTTTCGAAAGTGCAAAC
LOC_Os03g27590
Os.26833.1.S1_x_at--6--8631Chr03:15803775..15803799 (25 bp)
TGGTGTGTTATTTTTCTCTTCTGAA
LOC_Os03g27590
Os.26833.1.S1_x_at--104--7071Chr03:15803743..15803767 (25 bp)
GTAATATGCTCGACGATCGGTGCAG
LOC_Os03g27590
Os.26833.1.S1_x_at--421--8991Chr03:15803600..15803624 (25 bp)
TGAAGAACTTCCTGAGCCTACCAAG
LOC_Os03g27590
Os.26833.1.S1_x_at--94--5091Chr03:15803546..15803570 (25 bp)
GCACCAAGGCGTTCGTCAGATCATA
LOC_Os03g27590
Os.26833.1.S1_x_at--171--8531NONE
TGGACACTTTGTACCTGCTGATCAG
NONE
Os.26833.1.S1_x_at--255--1671Chr03:15803005..15803029 (25 bp)
AGCCCTGCATTGCACTGAGCATGAT
LOC_Os03g27590
Os.26833.1.S1_x_at--1161--8831Chr03:15802984..15803008 (25 bp)
TGATCAGTAGCATAACCCAGTCTCC
LOC_Os03g27590
Os.26833.1.S1_x_at--41--1691Chr03:15802959..15802983 (25 bp)
AGCCAGTTAGATATCTCCCATCAGT
LOC_Os03g27590
Os.26833.1.S1_x_at--432--6511Chr03:15802892..15802916 (25 bp)
GATATACCTCACTCTCAATTAGCAG
LOC_Os03g27590
Target Sequence 
ATATCTTAAATGTCGGTGCCTTTCGAAAGTGCAAACCCTGATTTGGTGTGTTATTTTTCTCTTCTGAAGCTTGATGTAAT
ATGCTCGACGATCGGTGCAGAAGCATGGGTGAAGAAGCTCAAATGGGATGGGCTGAAGAACTTCCTGAGCCTACCAAGGC
AGCCTTTGAAGTGTGGCTCTTCCAAGGGCACCAAGGCGTTCGTCAGATCATACAAGAACCTGCATTTCTACTGGATACTT
GGGGCTGGACACTTTGTACCTGCTGATCAGCCCTGCATTGCACTGAGCATGATCAGTAGCATAACCCAGTCTCCAGCCAG
TTAGATATCTCCCATCAGTAACAGATATACTCAAGAAAAGATAGAAAACAGAAGGCAAACAGATATACCTCACTCTCAAT
TAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26833.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis