Browse Element(s) Details


Os.57187.1.S1_at

Description gb:AK111108.1
DB_XREF= gi:32996317
TID=Os.57187.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-A04, full insert sequence.
FL= gb:AK111108.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g563701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56330OsAffx.26631.1.S1_at11/114+33361246..33363275ABC transporter family protein
LOC_Os04g56340NANA4+33366752..33367006hypothetical protein
LOC_Os04g56350Os.14253.1.S2_at11/114+33370801..33372769Nucleolar protein, Nop52 containing protein, expressed
LOC_Os04g56350Os.14253.1.S1_s_at11/114+33370801..33372769Nucleolar protein, Nop52 containing protein, expressed
LOC_Os04g56360OsAffx.26633.1.S1_at11/114+33375236..33377019Protein kinase domain containing protein
LOC_Os04g56360OsAffx.28666.1.S1_x_at1/114+33375236..33377019Protein kinase domain containing protein
LOC_Os04g56370Os.57187.1.S1_at1/114+33385707..33385976hypothetical protein
LOC_Os04g56380Os.35344.18.S1_x_at8/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380OsAffx.22940.5.S1_at7/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380Os.35344.3.S1_x_at7/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380OsAffx.22940.5.S1_x_at4/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56390Os.51574.1.S1_at11/114+33404069..33404856expressed protein
LOC_Os04g56400Os.7879.1.S1_at11/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.7879.2.S1_at11/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.19294.1.S1_at3/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.50043.1.A1_at1/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57187.1.S1_at--651--6951Chr04:33385829..33385853 (25 bp)
GTCAGGCCGAGGAGCGCGTTCGACG
LOC_Os04g56370
Os.57187.1.S1_at--1111--4211Chr04:33385636..33385660 (25 bp)
CCGCGGCTTGGAGAGACGCGTCCAT
NONE
Os.57187.1.S1_at--580--2731Chr04:33385572..33385596 (25 bp)
AAGCAAAGCTCCATCGCAGAGTCGT
NONE
Os.57187.1.S1_at--861--2351Chr04:33385568..33385592 (25 bp)
AAAGCTCCATCGCAGAGTCGTCATG
NONE
Os.57187.1.S1_at--979--5951Chr04:33385494..33385518 (25 bp)
GAGAAGAGAGGAGTTCGTCCAGTAT
NONE
Os.57187.1.S1_at--576--1351Chr04:33385490..33385514 (25 bp)
AGAGAGGAGTTCGTCCAGTATTGTT
NONE
Os.57187.1.S1_at--19--10611Chr04:33385461..33385485 (25 bp)
TTCTGCTTCCCTTTCTTCTTTGTCC
NONE
Os.57187.1.S1_at--687--9571Chr04:33385435..33385459 (25 bp)
TCTTCTGATCCACTTAATTTGGTTT
NONE
Os.57187.1.S1_at--1060--8131Chr04:33385343..33385367 (25 bp)
GGACAGCAAGGCCATTCTGTTGATC
NONE
Os.57187.1.S1_at--160--1491Chr04:33385339..33385363 (25 bp)
AGCAAGGCCATTCTGTTGATCGAAA
NONE
Os.57187.1.S1_at--120--891Chr04:33385335..33385359 (25 bp)
AGGCCATTCTGTTGATCGAAAGAGA
NONE
Target Sequence 
GTCAGGCCGAGGAGCGCGTTCGACGTGGTGGTGGCCGGGCTCGTCGGCATCGGGCTCGGGCACCGGTGGCGGCCCGGCGG
CGGCGACCTGGTCGACGACGAGAAGCGGCGGGTGCCGACGGGGCCCAACCCNNTGCACAANCNGATGAGTACTACGTGGN
TACGTGTACGTACGTATAGCTANCTAGCTAGCCTGCCGCGGCTTGGAGAGACGCGTCCATGNNATATATATTTCCGCCAN
TAGCGTGGGCGCGANGANCAAGCAAAGCTCCATCGCAGAGTCGTCATGNCGGCGGCGACGACGACGAGGAGGAGAAGAGG
AGGAGAAGAATGGGAAGGAGAAGAGAGGAGTTCGTCCAGTATTGTTNCCCTTCTGCTTCCCTTTCTTCTTTGTCCCTCTT
CTGATCCACTTAATTTGGTTTNTTTTNNATTTTNTNTNCTTGATTNNATNTTGATTTTTNTCCTCTCTTGTATTGATTGG
NTTGTGAAGTGGACAGCAAGGCCATTCTGTTGATCGAAAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis