Browse Element(s) Details


Os.14253.1.S2_at

Description gb:AK119253.1
DB_XREF= gi:37988876
TID=Os.14253.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G09, full insert sequence.
FL= gb:AK119253.1 gb:AK064729.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5635011/11Nucleolar protein, Nop52 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56300Os.17372.1.S1_at11/114+33346740..33349287expressed protein
LOC_Os04g56309NANA4+33350494..33354481hypothetical protein
LOC_Os04g56320Os.52480.1.S1_at11/114+33356080..33360581ATPase, AAA family protein, expressed
LOC_Os04g56330OsAffx.26631.1.S1_at11/114+33361246..33363275ABC transporter family protein
LOC_Os04g56340NANA4+33366752..33367006hypothetical protein
LOC_Os04g56350Os.14253.1.S2_at11/114+33370801..33372769Nucleolar protein, Nop52 containing protein, expressed
LOC_Os04g56350Os.14253.1.S1_s_at11/114+33370801..33372769Nucleolar protein, Nop52 containing protein, expressed
LOC_Os04g56360OsAffx.26633.1.S1_at11/114+33375236..33377019Protein kinase domain containing protein
LOC_Os04g56360OsAffx.28666.1.S1_x_at1/114+33375236..33377019Protein kinase domain containing protein
LOC_Os04g56370Os.57187.1.S1_at1/114+33385707..33385976hypothetical protein
LOC_Os04g56380Os.35344.18.S1_x_at8/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380OsAffx.22940.5.S1_at7/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380Os.35344.3.S1_x_at7/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380OsAffx.22940.5.S1_x_at4/114+33395871..33402334transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14253.1.S2_at--543--4151Chr04:33371043..33371067 (25 bp)
CGCGAAGCGCTTGCGGAAGTTGCAA
LOC_Os04g56350
Os.14253.1.S2_at--733--191Chr04:33371017..33371041 (25 bp)
ATTTCTCTGCATGAACTCTTTTATG
LOC_Os04g56350
Os.14253.1.S2_at--414--2011Chr04:33371003..33371027 (25 bp)
ACTCTTTTATGAATTGACACTGCAG
LOC_Os04g56350
Os.14253.1.S2_at--173--5031Chr04:33370982..33371006 (25 bp)
GCAGTGATCATGCTTTCTGCATGGT
LOC_Os04g56350
Os.14253.1.S2_at--164--5011Chr04:33370964..33370988 (25 bp)
GCATGGTGTGTCTTTTCAACCGTGT
LOC_Os04g56350
Os.14253.1.S2_at--320--9711Chr04:33370949..33370973 (25 bp)
TCAACCGTGTTCTATTATTACTTAA
LOC_Os04g56350
Os.14253.1.S2_at--553--10171Chr04:33370932..33370956 (25 bp)
TTACTTAATTCTTCACCTAGGTTAG
LOC_Os04g56350
Os.14253.1.S2_at--780--3351Chr04:33370919..33370943 (25 bp)
CACCTAGGTTAGTCTTATACGCTGT
LOC_Os04g56350
Os.14253.1.S2_at--711--7131Chr04:33370908..33370932 (25 bp)
GTCTTATACGCTGTTGACTATGCAA
LOC_Os04g56350
Os.14253.1.S2_at--417--7431Chr04:33370853..33370877 (25 bp)
GTGTTATGTCATAGCGCATTCATGA
LOC_Os04g56350
Os.14253.1.S2_at--325--7711Chr04:33370819..33370843 (25 bp)
GGGTGATCATTCTTTGGAATTAGCA
LOC_Os04g56350
Target Sequence 
CGCGAAGCGCTTGCGGAAGTTGCAAAATTTCTCTGCATGAACTCTTTTATGAATTGACACTGCAGTGATCATGCTTTCTG
CATGGTGTGTCTTTTCAACCGTGTTCTATTATTACTTAATTCTTCACCTAGGTTAGTCTTATACGCTGTTGACTATGCAA
CAAATTTATATTTATGGATTGTTTAATGTTGTGTTATGTCATAGCGCATTCATGATAATCATGNGGGTGATCATTCTTTG
GAATTAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14253.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis