Browse Element(s) Details


OsAffx.26631.1.S1_at

Description tigr:9632.m05489
TID=OsAffx.26631.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5633011/11ABC transporter family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56284Os.50886.1.S1_at10/114+33335765..33336297expressed protein
LOC_Os04g56290Os.9181.1.S1_x_at11/114+33338235..33344907Possible apospory-associated protein C, putative, expressed
LOC_Os04g56290Os.35113.1.S1_at11/114+33338235..33344907Possible apospory-associated protein C, putative, expressed
LOC_Os04g56300Os.17372.1.S1_at11/114+33346740..33349287expressed protein
LOC_Os04g56309NANA4+33350494..33354481hypothetical protein
LOC_Os04g56320Os.52480.1.S1_at11/114+33356080..33360581ATPase, AAA family protein, expressed
LOC_Os04g56330OsAffx.26631.1.S1_at11/114+33361246..33363275ABC transporter family protein
LOC_Os04g56340NANA4+33366752..33367006hypothetical protein
LOC_Os04g56350Os.14253.1.S2_at11/114+33370801..33372769Nucleolar protein, Nop52 containing protein, expressed
LOC_Os04g56350Os.14253.1.S1_s_at11/114+33370801..33372769Nucleolar protein, Nop52 containing protein, expressed
LOC_Os04g56360OsAffx.26633.1.S1_at11/114+33375236..33377019Protein kinase domain containing protein
LOC_Os04g56360OsAffx.28666.1.S1_x_at1/114+33375236..33377019Protein kinase domain containing protein
LOC_Os04g56370Os.57187.1.S1_at1/114+33385707..33385976hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26631.1.S1_at--535--7591Chr04:33362631..33362655 (25 bp)
GGGCAGGGAAATCCACCCTCCTCAA
LOC_Os04g56330
OsAffx.26631.1.S1_at--237--8891Chr04:33362712..33362736 (25 bp)
TGAGGATCGGGCTCTACTCGCAGCA
LOC_Os04g56330
OsAffx.26631.1.S1_at--321--5371Chr04:33362761..33362783 (23 bp)
GAAGAGCCCCGTGCAGCACGGACAA
LOC_Os04g56330
OsAffx.26631.1.S1_at--88--9051Chr04:33362772..33362851 (25 bp)
TGCAGCACGGACAATGTCACCGAGA
LOC_Os04g56330
OsAffx.26631.1.S1_at--1059--9671Chr04:33362843..33362867 (25 bp)
TCACCGAGAGTGTCTCGACACGCAT
LOC_Os04g56330
OsAffx.26631.1.S1_at--423--1591Chr04:33362905..33362929 (25 bp)
AGCTCGCCAGGTTCGGGCTGGCCAA
LOC_Os04g56330
OsAffx.26631.1.S1_at--818--5851Chr04:33363038..33363062 (25 bp)
GACCAACAACCTCGACATGCAGAAC
LOC_Os04g56330
OsAffx.26631.1.S1_at--440--3791Chr04:33363048..33363072 (25 bp)
CTCGACATGCAGAACATCGACGCGC
LOC_Os04g56330
OsAffx.26631.1.S1_at--485--7131Chr04:33363108..33363132 (25 bp)
GTCATCGTCAGCCATGACTCGAGGC
LOC_Os04g56330
OsAffx.26631.1.S1_at--851--671Chr04:33363121..33363145 (25 bp)
ATGACTCGAGGCTGGTGTCCCGCGT
LOC_Os04g56330
OsAffx.26631.1.S1_at--1080--4051Chr04:33363221..33363245 (25 bp)
CGAGTACAGGGACGATCTCCTGGAC
LOC_Os04g56330
Target Sequence 
GGGCAGGGAAATCCACCCTCCTCAAGCTCCTCGCCGGCGAGCTCACGCCGACGAGCGGCGAGGCGAGGAGGAACCCCAAG
CTGAGGATCGGGCTCTACTCGCAGCACTTCTGCGACGCGCTGCCGGAGGAGAAGAGCCCCGTGCAGCACGGACAATGTCA
CCGAGAGTGTCTCGACACGCATCCCCACCTGAAGAGCAAGCCATGGGAGGCGCGCGCCAAGCTCGCCAGGTTCGGGCTGG
CCAAGGAGAGCCACCTCACCACCATCGGCAAGCTCTCCGGCGGGCAGAAGGCCCGCGTCGCGCTCGCCTCCGTCGCGCTC
GGGGAGCCGCACGTGCTGCTGCTCGACGAGCCGACCAACAACCTCGACATGCAGAACATCGACGCGCTGGCGGACGCGCT
CGACGAGTTCGCCGGCGGCGTGGTCATCGTCAGCCATGACTCGAGGCTGGTGTCCCGCGTCTGCGACGACGAGGAGAGGA
GCGCGCTGTGGGTGGTGCAGGACGGCACGGTGAGGCCGTACGACGGCACGTTCGCCGAGTACAGGGACGATCTCCTGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis