Browse Element(s) Details


Os.9181.1.S1_x_at

Description gb:CB682680
DB_XREF= gi:29686405
DB_XREF=OSJNEf10E06.r
CLONE=OSJNEf10E06
TID=Os.9181.1
CNT=22
FEA=FLmRNA
TIER=Stack
STK=10
UG=Os.9181 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086C22, full insert sequence
FL= gb:AK071255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5629011/11Possible apospory-associated protein C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56240Os.7665.1.S1_at11/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56240Os.57060.1.S1_at1/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56250Os.49955.1.A1_at11/114+33315321..33316613F-box domain containing protein, expressed
LOC_Os04g56260OsAffx.22848.3.S1_x_at3/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_x_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56280OsAffx.4192.1.S1_at11/114+33332642..33333798hypothetical protein
LOC_Os04g56284Os.50886.1.S1_at10/114+33335765..33336297expressed protein
LOC_Os04g56290Os.9181.1.S1_x_at11/114+33338235..33344907Possible apospory-associated protein C, putative, expressed
LOC_Os04g56290Os.35113.1.S1_at11/114+33338235..33344907Possible apospory-associated protein C, putative, expressed
LOC_Os04g56300Os.17372.1.S1_at11/114+33346740..33349287expressed protein
LOC_Os04g56309NANA4+33350494..33354481hypothetical protein
LOC_Os04g56320Os.52480.1.S1_at11/114+33356080..33360581ATPase, AAA family protein, expressed
LOC_Os04g56330OsAffx.26631.1.S1_at11/114+33361246..33363275ABC transporter family protein
LOC_Os04g56340NANA4+33366752..33367006hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006012biological_processgalactose metabolism
GO:0004034molecular_functionaldose 1-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9181.1.S1_x_at--1063--2311Chr04:33342747..33342768 (22 bp)
AAAGGTGGCCTTCCTGATGCTGTTG
LOC_Os04g56290
Os.9181.1.S1_x_at--837--5291Chr04:33342901..33342925 (25 bp)
GAAGGCTAAGGCTATGTCAGACTTT
LOC_Os04g56290
Os.9181.1.S1_x_at--965--2651Chr04:33342977..33343001 (25 bp)
AAGCCGATTACTTTGAAGCCTGGTG
LOC_Os04g56290
Os.9181.1.S1_x_at--1141--2311Chr04:33343015..33343039 (25 bp)
AAAGTTGGAACTGTCTGCTGTCCCA
LOC_Os04g56290
Os.9181.1.S1_x_at--209--9131Chr04:33343030..33343054 (25 bp)
TGCTGTCCCATCTAGCTATTACAGT
LOC_Os04g56290
Os.9181.1.S1_x_at--934--6731Chr04:33343076..33343100 (25 bp)
GTTCTTCAGGATTCAAGTGTCCCGG
LOC_Os04g56290
Os.9181.1.S1_x_at--638--8711Chr04:33343093..33343117 (25 bp)
TGTCCCGGAGGACTCAATCAGCTAG
LOC_Os04g56290
Os.9181.1.S1_x_at--203--3751Chr04:33343105..33343129 (25 bp)
CTCAATCAGCTAGTCCTTAGTGGAT
LOC_Os04g56290
Os.9181.1.S1_x_at--124--7391Chr04:33344264..33344288 (25 bp)
GTGTCAAAACGTTTATTCCATTCTA
LOC_Os04g56290
Os.9181.1.S1_x_at--494--10411Chr04:33344306..33344330 (25 bp)
TTTTGGCATGCATATCTGAACTGAG
LOC_Os04g56290
Os.9181.1.S1_x_at--899--311Chr04:33344392..33344416 (25 bp)
ATACCCTGTATATGCATGTTTGAAG
LOC_Os04g56290
Target Sequence 
AAAGGTGGCCTTCCTGATGCTGTTGTTTGGAACCCTTGGGACAAGAAGGCTAAGGCTATGTCAGACTTTGGGGATGACGA
ATATAAACGCATGGTCTGTGTGGAGGCAGCTGCTATAGAAAAGCCGATTACTTTGAAGCCTGGTGAGGAGTGGACTGGAA
AGTTGGAACTGTCTGCTGTCCCATCTAGCTATTACAGTGGTCAGCTGGANCCTGATCGTGTTCTTCAGGATTCAAGTGTC
CCGGAGGACTCAATCAGCTAGTCCTTAGTGGATATTTGTCCNAGGTAGACTATTNATATCATATGCATAAGGGACATTGG
CAACAAGGAGTGTCAAAACGTTTATTCCATTCTATTCAAATCTTTGTTGTTTTTTGGCATGCATATCTGAACTGAGGAAT
TTCAAAATTGATTTACGTTTTGATATCTACATAACGTAAGGGGACGGGTCGGTATTAATACCCTGTATATGCATGTTTGA
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9181.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis