Browse Element(s) Details


Os.57060.1.S1_at

Description gb:AK110839.1
DB_XREF= gi:32996048
TID=Os.57060.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57060 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-B04, full insert sequence.
FL= gb:AK110839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2725011/11Plant viral-response family protein, expressed
LOC_Os02g506301/11Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os04g562401/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27210Os.25110.1.S1_a_at10/119+16542047..16548778lecithine cholesterol acyltransferase, putative, expressed
LOC_Os09g27220OsAffx.17926.1.S1_at11/119+16551721..16553781expressed protein
LOC_Os09g27220Os.50944.1.S1_at11/119+16551721..16553781expressed protein
LOC_Os09g27220Os.50944.1.S1_x_at11/119+16551721..16553781expressed protein
LOC_Os09g27230OsAffx.17927.1.S1_at11/119+16554670..16556678expressed protein
LOC_Os09g27240Os.18030.1.S1_at11/119+16557394..16560749Mitochondrial carrier protein, expressed
LOC_Os09g27250Os.57060.1.S1_at11/119+16563528..16565070Plant viral-response family protein, expressed
LOC_Os09g27260Os.9107.1.S1_a_at11/119+16572501..16573892Plant viral-response family protein, expressed
LOC_Os09g27260Os.9107.2.S1_x_at11/119+16572501..16573892Plant viral-response family protein, expressed
LOC_Os09g27270NANA9+16579415..16579891RRNA methyltransferase 3, putative
LOC_Os09g27280OsAffx.30053.1.S1_at11/119+16587442..16587808hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0042023biological_processDNA endoreduplication
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0004806molecular_functiontriacylglycerol lipase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57060.1.S1_at--60--10651Chr09:16564058..16564082 (25 bp)
TTCGCTGCGTTGGAGATAGAGGTTT
LOC_Os09g27250
Os.57060.1.S1_at--292--3431Chr09:16564014..16564038 (25 bp)
CAGAGGTTTCTGTGTGAAGAGGATT
LOC_Os09g27250
Os.57060.1.S1_at--470--7671Chr09:16563977..16564001 (25 bp)
GGGATATCCCTTCGTTTTTTACATG
LOC_Os09g27250
Os.57060.1.S1_at--539--451Chr09:16563972..16563996 (25 bp)
ATCCCTTCGTTTTTTACATGTCACT
LOC_Os09g27250
Os.57060.1.S1_at--164--11515Chr11:22785278..22785305 (25 bp)
AGTAAAAATTCTTCTACATCTCGCA
NONE
Os.57060.1.S1_at--863--5211Chr09:16563821..16563845 (25 bp)
GAATATACGTTAAGTAGCTCCGGTT
LOC_Os09g27250
Os.57060.1.S1_at--501--6811Chr09:16563790..16563814 (25 bp)
GTTTTCTTCGTTACAAGATGTAGAA
LOC_Os09g27250
Os.57060.1.S1_at--829--3091Chr09:16563633..16563657 (25 bp)
AATAGTTTCCCGTTTCTGTGTACAG
LOC_Os09g27250
Os.57060.1.S1_at--212--10651Chr09:16563627..16563651 (25 bp)
TTCCCGTTTCTGTGTACAGTTGCTT
LOC_Os09g27250
Os.57060.1.S1_at--1074--2131Chr09:16563612..16563636 (25 bp)
ACAGTTGCTTGTATTGATCGATCAA
LOC_Os09g27250
Os.57060.1.S1_at--299--5171Chr09:16563565..16563589 (25 bp)
GAATGGTGAAGCTCCTATAAAAATT
LOC_Os09g27250
Target Sequence 
TTCGCTGCGTTGGAGATAGAGGTTTGATTGGCAAAATTGTAGGACAGAGGTTTCTGTGTGAAGAGGATTTTGATCGCTCG
GGGGATATCCCTTCGTTTTTTACATGTCACTTAAATGGTTATGAAAAAAATTTAAAAAAATTGAGAAGATGTATTAACAT
GTGATATATCACTCTATAAATATTCAAGTAAAAATTCTTCTACATCTCGCAACGAAAAAAAAAATAAATTTGACTCTGAA
TATACGTTAAGTAGCTCCGGTTTAATTTGTTTTCTTCGTTACAAGATGTAGAAGTTAAATTTTTACTTGCATGTTTGTGG
AGTGTTATATTACATGTTAATACACATTCTCAATTTTTTTTCAAATATTTCATAACCATTTAAGTAACATATAAAGAACG
AGGGGATATCCCCTCGAGGGATTAAAATAGTTTCCCGTTTCTGTGTACAGTTGCTTGTATTGATCGATCAAAGTGCAATG
AATTTCGTTTGAAGAATGGTGAAGCTCCTATAAAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis