Browse Element(s) Details


OsAffx.17927.1.S1_at

Description tigr:9637.m02386
TID=OsAffx.17927.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2723011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27190OsAffx.17925.1.S1_at11/119+16529343..16533773RWP-RK domain containing protein
LOC_Os09g27200NANA9+16534787..16535756hypothetical protein
LOC_Os09g27210Os.25110.1.S1_a_at10/119+16542047..16548778lecithine cholesterol acyltransferase, putative, expressed
LOC_Os09g27220OsAffx.17926.1.S1_at11/119+16551721..16553781expressed protein
LOC_Os09g27220Os.50944.1.S1_at11/119+16551721..16553781expressed protein
LOC_Os09g27220Os.50944.1.S1_x_at11/119+16551721..16553781expressed protein
LOC_Os09g27230OsAffx.17927.1.S1_at11/119+16554670..16556678expressed protein
LOC_Os09g27240Os.18030.1.S1_at11/119+16557394..16560749Mitochondrial carrier protein, expressed
LOC_Os09g27250Os.57060.1.S1_at11/119+16563528..16565070Plant viral-response family protein, expressed
LOC_Os09g27260Os.9107.1.S1_a_at11/119+16572501..16573892Plant viral-response family protein, expressed
LOC_Os09g27260Os.9107.2.S1_x_at11/119+16572501..16573892Plant viral-response family protein, expressed
LOC_Os09g27270NANA9+16579415..16579891RRNA methyltransferase 3, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17927.1.S1_at--735--8071Chr09:16555776..16555800 (25 bp)
GGAGCTTTACAATGTACAGAGATTT
LOC_Os09g27230
OsAffx.17927.1.S1_at--1049--171Chr09:16555797..16555821 (25 bp)
ATTTAACCATCAAGCTGTTCCTCTT
LOC_Os09g27230
OsAffx.17927.1.S1_at--937--9571Chr09:16555818..16555842 (25 bp)
TCTTCCTGCTACTCCAAAATCTGAA
LOC_Os09g27230
OsAffx.17927.1.S1_at--808--3271Chr09:16555832..16555954 (25 bp)
CAAAATCTGAAGACGAGAGCTCAAA
LOC_Os09g27230
OsAffx.17927.1.S1_at--198--9711Chr09:16555950..16555974 (25 bp)
TCAAAGGAGGACAGCCCGGTGACAC
LOC_Os09g27230
OsAffx.17927.1.S1_at--1038--6771Chr09:16555994..16556018 (25 bp)
GTTACCTCGTTCGTTCCATAGACCA
LOC_Os09g27230
OsAffx.17927.1.S1_at--309--4031Chr09:16556001..16556025 (25 bp)
CGTTCGTTCCATAGACCATTGTCAG
LOC_Os09g27230
OsAffx.17927.1.S1_at--830--10011Chr09:16556012..16556036 (25 bp)
TAGACCATTGTCAGGTGGTGGTGCA
LOC_Os09g27230
OsAffx.17927.1.S1_at--923--431Chr09:16556045..16556069 (25 bp)
ATCTTCATCAGATTCTCTTGAGCAT
LOC_Os09g27230
OsAffx.17927.1.S1_at--394--5931Chr09:16556064..16556088 (25 bp)
GAGCATCATTCAAACCACTACTGTA
LOC_Os09g27230
OsAffx.17927.1.S1_at--361--1711Chr09:16556077..16556101 (25 bp)
ACCACTACTGTAATGGTGGCCACCA
LOC_Os09g27230
Target Sequence 
GGAGCTTTACAATGTACAGAGATTTAACCATCAAGCTGTTCCTCTTCCTGCTACTCCAAAATCTGAAGACGAGAGCTCAA
AGGAGGACAGCCCGGTGACACCACCACTGGGGAAGGAACGGTTACCTCGTTCGTTCCATAGACCATTGTCAGGTGGTGGT
GCAGTGGGTTCATCTTCATCAGATTCTCTTGAGCATCATTCAAACCACTACTGTAATGGTGGCCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis