Browse Element(s) Details


Os.50944.1.S1_x_at

Description gb:AK059606.1
DB_XREF= gi:32969624
TID=Os.50944.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50944 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-E12, full insert sequence.
FL= gb:AK059606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2722011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27190OsAffx.17925.1.S1_at11/119+16529343..16533773RWP-RK domain containing protein
LOC_Os09g27200NANA9+16534787..16535756hypothetical protein
LOC_Os09g27210Os.25110.1.S1_a_at10/119+16542047..16548778lecithine cholesterol acyltransferase, putative, expressed
LOC_Os09g27220OsAffx.17926.1.S1_at11/119+16551721..16553781expressed protein
LOC_Os09g27220Os.50944.1.S1_at11/119+16551721..16553781expressed protein
LOC_Os09g27220Os.50944.1.S1_x_at11/119+16551721..16553781expressed protein
LOC_Os09g27230OsAffx.17927.1.S1_at11/119+16554670..16556678expressed protein
LOC_Os09g27240Os.18030.1.S1_at11/119+16557394..16560749Mitochondrial carrier protein, expressed
LOC_Os09g27250Os.57060.1.S1_at11/119+16563528..16565070Plant viral-response family protein, expressed
LOC_Os09g27260Os.9107.1.S1_a_at11/119+16572501..16573892Plant viral-response family protein, expressed
LOC_Os09g27260Os.9107.2.S1_x_at11/119+16572501..16573892Plant viral-response family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50944.1.S1_x_at--802--1711Chr09:16551809..16551833 (25 bp)
ACCAGATCCTAATCCGCCATTAATG
LOC_Os09g27220
Os.50944.1.S1_x_at--382--10491Chr09:16551828..16551852 (25 bp)
TTAATGCCCTTAACTCCAAGCTCGA
LOC_Os09g27220
Os.50944.1.S1_x_at--796--9191Chr09:16551909..16551933 (25 bp)
TGCCATTATAAGCTCACGCGCGGCG
LOC_Os09g27220
Os.50944.1.S1_x_at--265--1771Chr09:16551954..16551978 (25 bp)
ACCTGTGACCTTGCTGTTGCTGTCA
LOC_Os09g27220
Os.50944.1.S1_x_at--248--1911Chr09:16552002..16552026 (25 bp)
ACGTGCATCGCGTGCTCGAAGCAGC
LOC_Os09g27220
Os.50944.1.S1_x_at--570--371Chr09:16552131..16552155 (25 bp)
ATCAAGGCGCTCACTGCGCAGGTGG
LOC_Os09g27220
Os.50944.1.S1_x_at--1018--7671Chr09:16552155..16552179 (25 bp)
GGGTTCTCGGTACTTCACTCTCGAG
LOC_Os09g27220
Os.50944.1.S1_x_at--1022--3951Chr09:16552162..16552186 (25 bp)
CGGTACTTCACTCTCGAGAGTCGAG
LOC_Os09g27220
Os.50944.1.S1_x_at--835--6011Chr09:16552177..16552201 (25 bp)
GAGAGTCGAGACTGTCACTGTGTGT
LOC_Os09g27220
Os.50944.1.S1_x_at--41--7111Chr09:16552190..16552214 (25 bp)
GTCACTGTGTGTGCTTGAAGCTCTT
LOC_Os09g27220
Os.50944.1.S1_x_at--1062--1571Chr09:16552208..16552232 (25 bp)
AGCTCTTCTTTTCTTATCCTGTTGA
LOC_Os09g27220
Target Sequence 
ACCAGATCCTAATCCGCCATTAATGCCCTTAACTCCAAGCTCGATATCAGAGGAGGAAGAAGAGGCGTAGGAGTAGTACG
GCTCCGCCGCCTCCCTCCCCTGCCATTATAAGCTCACGCGCGGCGCTCGCCCGGGCGGCTCTGCCACCTGTGACCTTGCT
GTTGCTGTCACCGGAGAGGCGGAGGGGATGCTCACGTGCATCGCGTGCTCGAAGCAGCCCGGCGGCGGCGGCGGGGAGCC
GCTGCACGAGCCGCCGGAGGACGAGGACGCCGTCGATGGCGGCGGCGGCGGCGGCGGGGCGACGCCCAGCACGCGGCTGG
CCATCAAGGCGCTCACTGCGCAGGTGGGGTTCTCGGTACTTCACTCTCGAGAGTCGAGACTGTCACTGTGTGTGCTTGAA
GCTCTTCTTTTCTTATCCTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50944.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis