Browse Element(s) Details


Os.18030.1.S1_at

Description gb:AK120833.1
DB_XREF= gi:37990456
TID=Os.18030.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019P07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019P07, full insert sequence.
FL= gb:AK120833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2724011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27190OsAffx.17925.1.S1_at11/119+16529343..16533773RWP-RK domain containing protein
LOC_Os09g27200NANA9+16534787..16535756hypothetical protein
LOC_Os09g27210Os.25110.1.S1_a_at10/119+16542047..16548778lecithine cholesterol acyltransferase, putative, expressed
LOC_Os09g27220OsAffx.17926.1.S1_at11/119+16551721..16553781expressed protein
LOC_Os09g27220Os.50944.1.S1_at11/119+16551721..16553781expressed protein
LOC_Os09g27220Os.50944.1.S1_x_at11/119+16551721..16553781expressed protein
LOC_Os09g27230OsAffx.17927.1.S1_at11/119+16554670..16556678expressed protein
LOC_Os09g27240Os.18030.1.S1_at11/119+16557394..16560749Mitochondrial carrier protein, expressed
LOC_Os09g27250Os.57060.1.S1_at11/119+16563528..16565070Plant viral-response family protein, expressed
LOC_Os09g27260Os.9107.1.S1_a_at11/119+16572501..16573892Plant viral-response family protein, expressed
LOC_Os09g27260Os.9107.2.S1_x_at11/119+16572501..16573892Plant viral-response family protein, expressed
LOC_Os09g27270NANA9+16579415..16579891RRNA methyltransferase 3, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18030.1.S1_at--562--10831Chr09:16559649..16559673 (25 bp)
TTGTGACCATGCCATTGGACACCAT
LOC_Os09g27240
Os.18030.1.S1_at--265--1891Chr09:16559464..16559488 (25 bp)
ACGTACGAGTTCCTCAAGCGGCTCT
LOC_Os09g27240
Os.18030.1.S1_at--1121--1671Chr09:16559419..16559443 (25 bp)
AGCCTCCCCTGACGAGACGAATAGA
LOC_Os09g27240
Os.18030.1.S1_at--307--3091Chr09:16559387..16559411 (25 bp)
AATAGGTGACCTTGCTTTGTTACTT
LOC_Os09g27240
Os.18030.1.S1_at--634--6771Chr09:16559369..16559393 (25 bp)
GTTACTTTCATTCCTTTCCAATGCT
LOC_Os09g27240
Os.18030.1.S1_at--38--4932Chr09:16559347..16559371 (25 bp)
GCTTGTTTCATCTTTTAGGTGTTGC
LOC_Os09g27240
Os.18030.1.S1_at--252--6951Chr09:16559310..16559334 (25 bp)
GTAGATAGTCTTTGTTTGCTCCTCT
LOC_Os09g27240
Os.18030.1.S1_at--662--4451Chr09:16559219..16559243 (25 bp)
GCCTTTTAGCTTCTGAATCTTCACA
LOC_Os09g27240
Os.18030.1.S1_at--359--5531Chr09:16559173..16559197 (25 bp)
GAAAAATTCCTGTCCATCTATATAA
LOC_Os09g27240
Os.18030.1.S1_at--1110--10171Chr09:16559153..16559177 (25 bp)
TATAAACGGCTGGTTCTCCATGCTG
LOC_Os09g27240
Os.18030.1.S1_at--850--7891Chr09:16559142..16559166 (25 bp)
GGTTCTCCATGCTGCAATGTTTTAC
LOC_Os09g27240
Target Sequence 
TTGTGACCATGCCATTGGACACCATCAAGACCAGGATGCAGGTCATGGATGGGGAAGGCGGCGAGCCGATTACGGTGGGG
AGGACGGTGAGGAGGCTGATCAAGGAGGGTGGATGGGNANCGTGTTACAGGGGGCTCGGCCCGAGGTGGNCGTCAATGTC
GCTGTCTGCCACCACCATGATCACCACGTACGAGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCT
GACGAGACGAATAGATGATGCAAATAGGTGACCTTGCTTTGTTACTTTCATTCCTTTCCAATGCTTGTTTCATCTTTTAG
GTGTTGCAAANAGTTGTTTGTAGATAGTCTTTGTTTGCTCCTCTAATTAAGCTAAGCAAATCAATGCAATCCACTCTTTN
AGAATGTTTTCTGTGCTATCAATAGGTTTTGCCTTTTAGCTTCTGAATCTTCACAACGGAGTAATTCATGTATACTGAAA
AATTCCTGTCCATCTATATAAACGGCTGGTTCTCCATGCTGCAATGTTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis