Browse Element(s) Details


OsAffx.17926.1.S1_at

Description tigr:9637.m02385
TID=OsAffx.17926.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F15I1.28 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2722011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27190OsAffx.17925.1.S1_at11/119+16529343..16533773RWP-RK domain containing protein
LOC_Os09g27200NANA9+16534787..16535756hypothetical protein
LOC_Os09g27210Os.25110.1.S1_a_at10/119+16542047..16548778lecithine cholesterol acyltransferase, putative, expressed
LOC_Os09g27220OsAffx.17926.1.S1_at11/119+16551721..16553781expressed protein
LOC_Os09g27220Os.50944.1.S1_at11/119+16551721..16553781expressed protein
LOC_Os09g27220Os.50944.1.S1_x_at11/119+16551721..16553781expressed protein
LOC_Os09g27230OsAffx.17927.1.S1_at11/119+16554670..16556678expressed protein
LOC_Os09g27240Os.18030.1.S1_at11/119+16557394..16560749Mitochondrial carrier protein, expressed
LOC_Os09g27250Os.57060.1.S1_at11/119+16563528..16565070Plant viral-response family protein, expressed
LOC_Os09g27260Os.9107.1.S1_a_at11/119+16572501..16573892Plant viral-response family protein, expressed
LOC_Os09g27260Os.9107.2.S1_x_at11/119+16572501..16573892Plant viral-response family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17926.1.S1_at--20--3731Chr09:16552140..16552467 (25 bp)
CTCACTGCGCAGATCAAGGACATTG
LOC_Os09g27220
OsAffx.17926.1.S1_at--756--5031Chr09:16552452..16552475 (24 bp)
GCAGATCAAGGACATTGCGTTGAAG
LOC_Os09g27220
OsAffx.17926.1.S1_at--694--5871Chr09:16552854..16552878 (25 bp)
GAGCCCGGCGTGCTGATAACCTTCG
LOC_Os09g27220
OsAffx.17926.1.S1_at--1126--7291Chr09:16552863..16552887 (25 bp)
GTGCTGATAACCTTCGTCTCGCTGC
LOC_Os09g27220
OsAffx.17926.1.S1_at--206--9411Chr09:16552876..16552900 (25 bp)
TCGTCTCGCTGCCACAGGGCGGCAA
LOC_Os09g27220
OsAffx.17926.1.S1_at--795--1711Chr09:16552903..16552925 (23 bp)
ACCTCAAACGCATCCGGTTCAGGGT
LOC_Os09g27220
OsAffx.17926.1.S1_at--1159--7731Chr09:16553676..16553700 (25 bp)
GGATAAAAAGCACACCCGTACCATT
LOC_Os09g27220
OsAffx.17926.1.S1_at--841--2711Chr09:16553683..16553707 (25 bp)
AAGCACACCCGTACCATTGGATATG
LOC_Os09g27220
OsAffx.17926.1.S1_at--242--6971Chr09:16553693..16553717 (25 bp)
GTACCATTGGATATGCTACCCTGTA
LOC_Os09g27220
OsAffx.17926.1.S1_at--849--4851Chr09:16553707..16553731 (25 bp)
GCTACCCTGTATATTAACTTCACTT
LOC_Os09g27220
OsAffx.17926.1.S1_at--181--10191Chr09:16553718..16553742 (25 bp)
TATTAACTTCACTTTTTCCCTCACT
LOC_Os09g27220
Target Sequence 
CTCACTGCGCAGATCAAGGACATTGCGTTGAAGGCGTCGGGCGCGTACCGGCACTGCAAGCCCTGCGCCGGCTCGTCGTC
GGCGGCGGGGGCCTCGCGCCGGCACCACCCGTACCACCACCGCGGCGGCGGCGGCGGCTTCGGCGACCCCGACGCGGCCT
CGGGCTCCGACCGGTTCCACTACGCGTACCGCCGCGCCACGAGCTCGGCGGCCTCGACGCCGCGCTTCCGCGGCGGCGGC
GGCGGCGGCGCGCTGTCGAGCGGGGACGCTACGCCGTCCATGAGCGCCCGCTCCGACTTCCCCATCGGCGACGAGGAGGA
TGAGGAGGAAGACGACGACGACGAGATGGTGTCAACCGGCGGCGGCGGCGGCGGCAAGGAGGAGGACGCGAAGGAGTGGG
TGGCGCAGGTGGAGCCCGGCGTGCTGATAACCTTCGTCTCGCTGCCACAGGGCGGCAACGACCTCAAACGCATCCGGTTC
AGGGTGGATAAAAAGCACACCCGTACCATTGGATATGCTACCCTGTATATTAACTTCACTTTTTCCCTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis