Browse Element(s) Details


Os.25110.1.S1_a_at

Description gb:AK099811.1
DB_XREF= gi:32985020
TID=Os.25110.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099F09, full insert sequence.
FL= gb:AK099811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2721010/11lecithine cholesterol acyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27170NANA9+16518774..16519127hypothetical protein
LOC_Os09g27180NANA9+16520438..16524392retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g27190OsAffx.17925.1.S1_at11/119+16529343..16533773RWP-RK domain containing protein
LOC_Os09g27200NANA9+16534787..16535756hypothetical protein
LOC_Os09g27210Os.25110.1.S1_a_at10/119+16542047..16548778lecithine cholesterol acyltransferase, putative, expressed
LOC_Os09g27220OsAffx.17926.1.S1_at11/119+16551721..16553781expressed protein
LOC_Os09g27220Os.50944.1.S1_at11/119+16551721..16553781expressed protein
LOC_Os09g27220Os.50944.1.S1_x_at11/119+16551721..16553781expressed protein
LOC_Os09g27230OsAffx.17927.1.S1_at11/119+16554670..16556678expressed protein
LOC_Os09g27240Os.18030.1.S1_at11/119+16557394..16560749Mitochondrial carrier protein, expressed
LOC_Os09g27250Os.57060.1.S1_at11/119+16563528..16565070Plant viral-response family protein, expressed
LOC_Os09g27260Os.9107.1.S1_a_at11/119+16572501..16573892Plant viral-response family protein, expressed
LOC_Os09g27260Os.9107.2.S1_x_at11/119+16572501..16573892Plant viral-response family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004607molecular_functionphosphatidylcholine-sterol O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25110.1.S1_a_at--54--2311Chr09:16542585..16542609 (25 bp)
AAAGGCGGCGTTTACCTGTCTAATG
LOC_Os09g27210
Os.25110.1.S1_a_at--338--9771Chr09:16542565..16542589 (25 bp)
TAATGGTGATGAGACCGTACCAGTT
LOC_Os09g27210
Os.25110.1.S1_a_at--759--3911Chr09:16542508..16542532 (25 bp)
GCGAGGAAAAACACGCTTCAACCCT
LOC_Os09g27210
Os.25110.1.S1_a_at--1015--5831Chr09:16542472..16542496 (25 bp)
GACCTACGTCAGAGAATACAGCCAT
LOC_Os09g27210
Os.25110.1.S1_a_at--335--1811Chr09:16542442..16542466 (25 bp)
ACCCTCAAATCTCCTCGAAGGCAGG
LOC_Os09g27210
Os.25110.1.S1_a_at--1024--2751Chr09:16542329..16542353 (25 bp)
AAGAGCTTGGCGGTGACCAGGTTTA
LOC_Os09g27210
Os.25110.1.S1_a_at--1145--7751Chr09:16542318..16542342 (25 bp)
GGTGACCAGGTTTATTCCGATATAT
LOC_Os09g27210
Os.25110.1.S1_a_at--540--8772Chr07:27680787..27681225 (25 bp)
TGTTTCCTGGCCAAAATTTTATGAG
NONE
Os.25110.1.S1_a_at--398--6931Chr09:16542137..16542161 (25 bp)
GTAGAGGCTGACTTGATTTGTATTA
LOC_Os09g27210
Os.25110.1.S1_a_at--263--171Chr09:16542113..16542137 (25 bp)
ATTTTGTGATTTGAGCGGCATTGTA
LOC_Os09g27210
Os.25110.1.S1_a_at--475--10251Chr09:16542047..16542071 (25 bp)
TTTGAAGTTGAGTACTCCCCACATT
NONE
Target Sequence 
AAAGGCGGCGTTTACCTGTCTAATGGTGATGAGACCGTACCAGTTNTTAGTGCAGGATATATGTGCGCAAAAGGCTGGCG
AGGAAAAACACGCTTCAACCCTTNTGGCAGCAAGACCTACGTCAGAGAATACAGCCATTNTCCACCCTCAAATCTCCTCG
AAGGCAGGGGCACCCAGAGTGGTGCGCNCGTTGATATCATGGGGAATTTTGCTTTAATCGAGGATATTATCAGGATTGCT
GCTGGGGCAACTGGTGAAGAGCTTGGCGGTGACCAGGTTTATTCCGATATATTCAAATGGTNTGATAAGATTAAATTGAA
ACTATAAAACTTTAAAAAAGCTTGGTAGTTTTGTAGGAGAATTATTTGTTTCCTGGCCAAAATTTTATGAGTTTTGATTC
GATATTGTAATATGATTTTTTTTACCTTTCCCTTAAGCTCTTAATTCAGTAGAGGCTGACTTGATTTGTATTATTTTGTG
ATTTGAGCGGCATTGTATATTAAAATGTACAGATGNATTCATGGGAATTGTGTTACGATTTGAAGTTGAGTACTCCCCAC
ATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25110.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis