Browse Element(s) Details


Os.9107.1.S1_a_at

Description gb:AK066356.1
DB_XREF= gi:32976374
TID=Os.9107.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013065C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013065C14, full insert sequence.
FL= gb:AK066356.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2726011/11Plant viral-response family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27210Os.25110.1.S1_a_at10/119+16542047..16548778lecithine cholesterol acyltransferase, putative, expressed
LOC_Os09g27220OsAffx.17926.1.S1_at11/119+16551721..16553781expressed protein
LOC_Os09g27220Os.50944.1.S1_at11/119+16551721..16553781expressed protein
LOC_Os09g27220Os.50944.1.S1_x_at11/119+16551721..16553781expressed protein
LOC_Os09g27230OsAffx.17927.1.S1_at11/119+16554670..16556678expressed protein
LOC_Os09g27240Os.18030.1.S1_at11/119+16557394..16560749Mitochondrial carrier protein, expressed
LOC_Os09g27250Os.57060.1.S1_at11/119+16563528..16565070Plant viral-response family protein, expressed
LOC_Os09g27260Os.9107.1.S1_a_at11/119+16572501..16573892Plant viral-response family protein, expressed
LOC_Os09g27260Os.9107.2.S1_x_at11/119+16572501..16573892Plant viral-response family protein, expressed
LOC_Os09g27270NANA9+16579415..16579891RRNA methyltransferase 3, putative
LOC_Os09g27280OsAffx.30053.1.S1_at11/119+16587442..16587808hypothetical protein
LOC_Os09g27290OsAffx.24927.1.S1_x_at11/119+16590747..16592595hypothetical protein
LOC_Os09g27290OsAffx.24927.2.S1_x_at4/119+16590747..16592595hypothetical protein
LOC_Os09g27300OsAffx.30352.2.S1_at8/119+16594235..16601906retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9107.1.S1_a_at--318--1991Chr09:16573356..16573380 (25 bp)
ACTCCGCGGACCACATGGGCGTGGA
LOC_Os09g27260
Os.9107.1.S1_a_at--1116--8791Chr09:16573215..16573239 (25 bp)
TGTTCCAGGGCGTCTGGTTCGTCGT
LOC_Os09g27260
Os.9107.1.S1_a_at--279--7211Chr09:16573195..16573219 (25 bp)
GTCGTCATGGGCGTCATGCTCTGGA
LOC_Os09g27260
Os.9107.1.S1_a_at--527--8631Chr09:16573188..16573212 (25 bp)
TGGGCGTCATGCTCTGGACCCCGGC
LOC_Os09g27260
Os.9107.1.S1_a_at--131--1691Chr09:16573005..16573029 (25 bp)
ACCTGACGAAGCTGTACCCGGAGGA
LOC_Os09g27260
Os.9107.1.S1_a_at--337--971Chr09:16572984..16573008 (25 bp)
AGGAGCCGAGGTACTTGCCGCTGGT
LOC_Os09g27260
Os.9107.1.S1_a_at--534--5011Chr09:16572918..16572942 (25 bp)
GCAGGTTCAGCATCGGAGACGACGA
LOC_Os09g27260
Os.9107.1.S1_a_at--9--951Chr09:16572872..16572896 (25 bp)
AGGTGGCTTCGGACACGTGGCGGGT
LOC_Os09g27260
Os.9107.1.S1_a_at--98--1411Chr09:16572790..16572814 (25 bp)
AGAAACAAATGTCAGGATGGCTATG
LOC_Os09g27260
Os.9107.1.S1_a_at--90--3491Chr09:16572778..16572802 (25 bp)
CAGGATGGCTATGTGATTAGATTGA
LOC_Os09g27260
Os.9107.1.S1_a_at--166--1191Chr09:16572760..16572784 (25 bp)
AGATTGAAAAACGAGGGCCTATGTG
LOC_Os09g27260
Target Sequence 
ACTCCGCGGACCACATGGGCGTGGAGGGGCAGTTCCACTGGCTGCTGCAGACGGTGATCGCCGTCACGCTCGCCACCACG
GTGCTCGGNATCCCCTGCCCCAGGAGCTTCGCCGTCAGCCTCGTCCGGTCGGCGAGCCTCGTGTTCCAGGGCGTCTGGTT
CGTCGTCATGGGCGTCATGCTCTGGACCCCGGCGCTCATCCCCAAGGGCTGCTTCCTCCACCTGACGAAGCTGTACCCGG
AGGAGCCGAGGTACTTGCCGCTGGTGAAGGGCGGCGGCGGCGGCGGCGACGGTGACAGCGACGGCGGCAGGTTCAGCATC
GGAGACGACGAGGACGACCTCGAGGCCGCGAAAGGTGGCTTCGGACACGTGGCGGGTGGCGGGAACGCCGTTGAAATCGA
GCGGTAATTTACTCCGCGATTCCGTGTCAGAGGAAGAAACAAATGTCAGGATGGCTATGTGATTAGATTGAAAAACGAGG
GCCTATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9107.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis