Browse Element(s) Details


OsAffx.30352.2.S1_at

Description gb:NM_184476.1
DB_XREF= gi:34896041
TID=OsAffx.30352.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Similar to Arabidopsis thaliana chromosome II BAC F26H6; putative retroelement pol polyprotein (AC006920) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0670011/11retrotransposon protein, putative, unclassified
LOC_Os09g273008/11retrotransposon protein, putative, unclassified
LOC_Os02g587707/11retrotransposon protein, putative, unclassified
LOC_Os04g454201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06660Os.1445.1.S1_at11/111+3132906..3137019Pyruvate decarboxylase isozyme 1, putative, expressed
LOC_Os01g06670Os.32879.1.S1_at11/111+3140403..3143614Leucine Rich Repeat family protein, expressed
LOC_Os01g06670Os.32879.1.S2_at11/111+3140403..3143614Leucine Rich Repeat family protein, expressed
LOC_Os01g06680OsAffx.1685.1.S1_at11/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.22766.1.S1_at11/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.25437.1.S1_at2/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.15781.1.S1_at2/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680Os.8855.1.S1_at1/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06690OsAffx.24927.2.S1_x_at11/111+3153981..3155789hypothetical protein
LOC_Os01g06690OsAffx.24927.1.S1_x_at7/111+3153981..3155789hypothetical protein
LOC_Os01g06700OsAffx.30352.2.S1_at11/111+3158122..3164468retrotransposon protein, putative, unclassified
LOC_Os01g06710OsAffx.30352.3.S1_at11/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.18947.1.S1_at2/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.39421.1.S1_at2/111+3164802..3168215hypothetical protein
LOC_Os01g06710OsAffx.30352.1.S1_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.27342.1.S2_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06710OsAffx.20967.1.S1_x_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06720OsAffx.23138.1.S1_at10/111+3173346..3176404Leucine Rich Repeat family protein
LOC_Os01g06730Os.24977.1.A1_at7/111+3178941..3182009Leucine Rich Repeat family protein
LOC_Os01g06740Os.11371.1.S1_at11/111+3185839..3187132Ribosome inactivating protein, expressed
LOC_Os01g06740Os.1665.2.S1_x_at1/111+3185839..3187132Ribosome inactivating protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30352.2.S1_at--147--813Chr09:16595445..16595469 (25 bp)
ATGGGATGGCCGAAGCCTTCAACAA
LOC_Os09g27300
OsAffx.30352.2.S1_at--374--10514Chr09:16595428..16595452 (25 bp)
TTCAACAAGACCCTCGGCAAGATCT
LOC_Os09g27300
OsAffx.30352.2.S1_at--992--8273Chr09:16595370..16595394 (25 bp)
GGCATGATCGTCTTTATGAAGCACT
LOC_Os09g27300
OsAffx.30352.2.S1_at--932--2012Chr09:16595348..16595372 (25 bp)
ACTATGGGCGTACCGAGTCACAGTT
LOC_Os09g27300
OsAffx.30352.2.S1_at--1000--313Chr09:16595243..16595324 (25 bp)
ATACTCTCTCGTCTATGGGAATGAA
LOC_Os09g27300
OsAffx.30352.2.S1_at--190--8053Chr09:16595261..16595285 (25 bp)
GGAGATTCAGCTACCATCTCTACGA
LOC_Os09g27300
OsAffx.30352.2.S1_at--977--2131Chr01:3158428..3158452 (25 bp)
ACAGATTCGCCTTCGATTTCAGGAG
LOC_Os01g06700
OsAffx.30352.2.S1_at--641--10091Chr01:3158378..3158402 (25 bp)
TAGGCGCCCTTCAAAATCTGGAGTT
LOC_Os01g06700
OsAffx.30352.2.S1_at--195--7253Chr09:16595044..16595066 (23 bp)
GTCCCATCGTCGTTACACACAAGAT
LOC_Os09g27300
OsAffx.30352.2.S1_at--1092--7551Chr01:3158214..3158238 (25 bp)
GGGCCATACGTCATCGAGCAAGCAT
LOC_Os01g06700
OsAffx.30352.2.S1_at--679--10113Chr09:16594966..16594990 (25 bp)
TATGACGGAGGTGCTTACCAGCTGA
LOC_Os09g27300
Target Sequence 
ATGGGATGGCCGAAGCCTTCAACAAGACCCTCGGCAAGATCTTAAAGAAGACGGTAGACAAGCATCGAAGGGATTGGCAT
GATCGTCTTTATGAAGCACTATGGGCGTACCGAGTCACAGTTCGTACCCCGACACAAGCTACCCCATACTCTCTCGTCTA
TGGGAATGAAGCTGTGTTGCCATTGGAGATTCAGCTACCATCTCTACGAGTAGCAATCCACGATGAACTTACTAAAGACG
AACAGATTCGCCTTCGATTTCAGGAGCTTGATGCCGTGGAGGAAGAGCGCCTAGGCGCCCTTCAAAATCTGGAGTTGTAT
CGCCAAAACATGGTGAGAGCCTATGATAAGCTCGTCAAGCAACGAGTCTTCAGGAAGGGCGAGCTCGTACTCGTTCTGCG
ACGTCCCATCGTCGTTACACACAAGATGAAGGGAAAGTTCGAGCCAAAATGGGAGGGGCCATACGTCATCGAGCAAGCAT
ATGACGGAGGTGCTTACCAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30352.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis